Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30429 | 3' | -54.6 | NC_006548.1 | + | 37095 | 0.66 | 0.68804 |
Target: 5'- gCGGguaGGUCCAGgucguGCCGGUCaaGCCGg -3' miRNA: 3'- -GCUag-CUAGGUUau---CGGCCGG--UGGCg -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 36656 | 0.73 | 0.305026 |
Target: 5'- cCGcgCGAgcaCCGcgGuGCCGGCCGCgGCg -3' miRNA: 3'- -GCuaGCUa--GGUuaU-CGGCCGGUGgCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 36576 | 0.68 | 0.531758 |
Target: 5'- uCGAcgCGAUCaacgccgcGGCCGGC-ACCGCg -3' miRNA: 3'- -GCUa-GCUAGguua----UCGGCCGgUGGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 34730 | 0.66 | 0.643207 |
Target: 5'- gGAUCG-UCCucgGGaCCGGUCACgaGCg -3' miRNA: 3'- gCUAGCuAGGuuaUC-GGCCGGUGg-CG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 34061 | 0.66 | 0.665689 |
Target: 5'- gGAUCGA-CgAGgugaacUGGCCGGCCgacaGCCGg -3' miRNA: 3'- gCUAGCUaGgUU------AUCGGCCGG----UGGCg -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 33757 | 0.69 | 0.51017 |
Target: 5'- gCGGUCGGUcgCCGAUGGCCaGGCgAUUaGCu -3' miRNA: 3'- -GCUAGCUA--GGUUAUCGG-CCGgUGG-CG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 33417 | 0.7 | 0.428013 |
Target: 5'- gGGUCGGaaUCCAGaucgcuuucuGCCGGCCAC-GCa -3' miRNA: 3'- gCUAGCU--AGGUUau--------CGGCCGGUGgCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 32964 | 0.66 | 0.665689 |
Target: 5'- gCGccCGGUgCAGcggcgcUGGCCGGCCGgcucCCGCu -3' miRNA: 3'- -GCuaGCUAgGUU------AUCGGCCGGU----GGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 32882 | 0.66 | 0.654459 |
Target: 5'- --cUCGA-CCGuuuGUGcGCCGGCCGCgGUg -3' miRNA: 3'- gcuAGCUaGGU---UAU-CGGCCGGUGgCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 32373 | 0.74 | 0.235019 |
Target: 5'- aGAUCGAUcgcgaggacgCCGAUggcaucagccuGGCCGGCCAgCCGUc -3' miRNA: 3'- gCUAGCUA----------GGUUA-----------UCGGCCGGU-GGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 30589 | 0.7 | 0.418295 |
Target: 5'- ---aCGAUUUAcgAGUCGGCCGgCGCg -3' miRNA: 3'- gcuaGCUAGGUuaUCGGCCGGUgGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 29800 | 0.68 | 0.553666 |
Target: 5'- cCGAUCGGgaagucaucaUCC---GGgCGGCgGCCGCa -3' miRNA: 3'- -GCUAGCU----------AGGuuaUCgGCCGgUGGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 29755 | 0.65 | 0.694706 |
Target: 5'- uGAUCGAggacagccagccgCCAcUA-CCGGCaGCCGCa -3' miRNA: 3'- gCUAGCUa------------GGUuAUcGGCCGgUGGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 29412 | 0.7 | 0.408713 |
Target: 5'- gCGGUCag-CCGAUcGCUGGCCgacguuGCCGCg -3' miRNA: 3'- -GCUAGcuaGGUUAuCGGCCGG------UGGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 29241 | 0.68 | 0.558081 |
Target: 5'- gCGAUCGAgcgcgugaaggaucUCCGccagcagcucgacaAUacccGGCUGGCCGCCGa -3' miRNA: 3'- -GCUAGCU--------------AGGU--------------UA----UCGGCCGGUGGCg -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 28969 | 0.71 | 0.362922 |
Target: 5'- --cUCGAUCUcGgcGCCGGCCGCCu- -3' miRNA: 3'- gcuAGCUAGGuUauCGGCCGGUGGcg -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 24588 | 0.69 | 0.51017 |
Target: 5'- uCGAgggCGAUCUGAaAGCCGGCgACuuCGUg -3' miRNA: 3'- -GCUa--GCUAGGUUaUCGGCCGgUG--GCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 24248 | 0.73 | 0.268184 |
Target: 5'- gCGGUCGAaacCCAGgacgCGGCCACCGCc -3' miRNA: 3'- -GCUAGCUa--GGUUaucgGCCGGUGGCG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 23020 | 0.68 | 0.564722 |
Target: 5'- aCGAUgaagCGGUCCuugaGGCCGGCgGCC-Ca -3' miRNA: 3'- -GCUA----GCUAGGuua-UCGGCCGgUGGcG- -5' |
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30429 | 3' | -54.6 | NC_006548.1 | + | 22566 | 0.68 | 0.564722 |
Target: 5'- uGAUCGAcggCCAAcUGGCCGGCguUCa- -3' miRNA: 3'- gCUAGCUa--GGUU-AUCGGCCGguGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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