miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30430 5' -56.1 NC_006548.1 + 12273 1.11 0.000473
Target:  5'- aGCACCGAACGUAGCGAUCGGCGCCGAc -3'
miRNA:   3'- -CGUGGCUUGCAUCGCUAGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 4764 0.77 0.136354
Target:  5'- gGCGCUucaggugcuuGAGCGUGGCGAUCGGCagGCUGu -3'
miRNA:   3'- -CGUGG----------CUUGCAUCGCUAGCCG--CGGCu -5'
30430 5' -56.1 NC_006548.1 + 6688 0.75 0.16564
Target:  5'- gGCGCCGAGaGUGGCGAgaacuucugcaCGGUGCUGAu -3'
miRNA:   3'- -CGUGGCUUgCAUCGCUa----------GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 34749 0.75 0.174992
Target:  5'- uCGCCGAagaucACGUAGUGGcCGGUGCCGu -3'
miRNA:   3'- cGUGGCU-----UGCAUCGCUaGCCGCGGCu -5'
30430 5' -56.1 NC_006548.1 + 5132 0.75 0.189901
Target:  5'- uCGCCucgcGGACGUAGCGAaugUCGGgGCUGAc -3'
miRNA:   3'- cGUGG----CUUGCAUCGCU---AGCCgCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 33729 0.73 0.231503
Target:  5'- aGUACgCGAugagcuucagugaucGCG-AGCGGUCGGuCGCCGAu -3'
miRNA:   3'- -CGUG-GCU---------------UGCaUCGCUAGCC-GCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 28892 0.73 0.235193
Target:  5'- cCACCGGccaaacCGUcgaGGCGGcCGGCGCCGAg -3'
miRNA:   3'- cGUGGCUu-----GCA---UCGCUaGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 21310 0.73 0.247852
Target:  5'- cGCACCGucgGCGgcGgGAauuUCGGUGCUGAu -3'
miRNA:   3'- -CGUGGCu--UGCauCgCU---AGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 28079 0.73 0.247852
Target:  5'- cGCGCCGAAcCGcGGCaGAaacUCGGCcGCCGGa -3'
miRNA:   3'- -CGUGGCUU-GCaUCG-CU---AGCCG-CGGCU- -5'
30430 5' -56.1 NC_006548.1 + 22629 0.72 0.274853
Target:  5'- -uGCCGGaaGCGgaacugcGGCaGAUCGGUGCCGAu -3'
miRNA:   3'- cgUGGCU--UGCa------UCG-CUAGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 20354 0.72 0.277679
Target:  5'- uGCGCCGccuGCGUGacuucuucgucgagcGCGAa-GGCGCCGAa -3'
miRNA:   3'- -CGUGGCu--UGCAU---------------CGCUagCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 12609 0.72 0.289948
Target:  5'- aGCGCUcGACGgaaucgaaccaggccAGCuGGUCGGCGCCGGa -3'
miRNA:   3'- -CGUGGcUUGCa--------------UCG-CUAGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 12126 0.72 0.296613
Target:  5'- cGCACCG-ACccAGCaugcUCGGCGCCGGa -3'
miRNA:   3'- -CGUGGCuUGcaUCGcu--AGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 28602 0.72 0.296613
Target:  5'- aGCGCCGcGACcUGGC---CGGCGCCGAg -3'
miRNA:   3'- -CGUGGC-UUGcAUCGcuaGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 9594 0.72 0.296613
Target:  5'- uGCAUCGAGCGcGGCGcgccagguguccAUCGGgGUCGGg -3'
miRNA:   3'- -CGUGGCUUGCaUCGC------------UAGCCgCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 2231 0.71 0.31185
Target:  5'- aGCACCuGGuagGCGUAGcCGGUCagcuccGGCGCCGc -3'
miRNA:   3'- -CGUGG-CU---UGCAUC-GCUAG------CCGCGGCu -5'
30430 5' -56.1 NC_006548.1 + 5140 0.71 0.319688
Target:  5'- cUugCGGugGUgGGUGAgucCGGCGCCGGu -3'
miRNA:   3'- cGugGCUugCA-UCGCUa--GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 27193 0.71 0.335806
Target:  5'- -uGCCGAGCGUGcucGCGuccagcaggCGGCGaCCGAg -3'
miRNA:   3'- cgUGGCUUGCAU---CGCua-------GCCGC-GGCU- -5'
30430 5' -56.1 NC_006548.1 + 13391 0.7 0.361077
Target:  5'- aGCGCCGGcggaaucggcgcGCGcuccugcGGCGGgcaaacCGGCGCCGAg -3'
miRNA:   3'- -CGUGGCU------------UGCa------UCGCUa-----GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 3683 0.7 0.378646
Target:  5'- aCGCUGAGCGccgaGGCGGUgaacUGGCGCUGGc -3'
miRNA:   3'- cGUGGCUUGCa---UCGCUA----GCCGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.