miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30430 5' -56.1 NC_006548.1 + 2231 0.71 0.31185
Target:  5'- aGCACCuGGuagGCGUAGcCGGUCagcuccGGCGCCGc -3'
miRNA:   3'- -CGUGG-CU---UGCAUC-GCUAG------CCGCGGCu -5'
30430 5' -56.1 NC_006548.1 + 3635 0.67 0.516243
Target:  5'- gGCGCUcAGCGUcaUGGUCGGgGCUGAa -3'
miRNA:   3'- -CGUGGcUUGCAucGCUAGCCgCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 3683 0.7 0.378646
Target:  5'- aCGCUGAGCGccgaGGCGGUgaacUGGCGCUGGc -3'
miRNA:   3'- cGUGGCUUGCa---UCGCUA----GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 4764 0.77 0.136354
Target:  5'- gGCGCUucaggugcuuGAGCGUGGCGAUCGGCagGCUGu -3'
miRNA:   3'- -CGUGG----------CUUGCAUCGCUAGCCG--CGGCu -5'
30430 5' -56.1 NC_006548.1 + 5044 0.67 0.526891
Target:  5'- uGCACCaGAucGCGgcgcagGGUGGauuuacCGGCGCCGGa -3'
miRNA:   3'- -CGUGG-CU--UGCa-----UCGCUa-----GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 5132 0.75 0.189901
Target:  5'- uCGCCucgcGGACGUAGCGAaugUCGGgGCUGAc -3'
miRNA:   3'- cGUGG----CUUGCAUCGCU---AGCCgCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 5140 0.71 0.319688
Target:  5'- cUugCGGugGUgGGUGAgucCGGCGCCGGu -3'
miRNA:   3'- cGugGCUugCA-UCGCUa--GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 5583 0.66 0.581209
Target:  5'- cGgGCCGGcuuGCGcaacugguUGGCGAU-GGCGUCGAg -3'
miRNA:   3'- -CgUGGCU---UGC--------AUCGCUAgCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 6688 0.75 0.16564
Target:  5'- gGCGCCGAGaGUGGCGAgaacuucugcaCGGUGCUGAu -3'
miRNA:   3'- -CGUGGCUUgCAUCGCUa----------GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 8158 0.66 0.599972
Target:  5'- gGCACUGugcuccgucAugGUGGCGAUguucugguugauagCGGCGCUa- -3'
miRNA:   3'- -CGUGGC---------UugCAUCGCUA--------------GCCGCGGcu -5'
30430 5' -56.1 NC_006548.1 + 9466 0.67 0.505682
Target:  5'- -aGCCGGucgAUGaGGCGuUCGGCGCCu- -3'
miRNA:   3'- cgUGGCU---UGCaUCGCuAGCCGCGGcu -5'
30430 5' -56.1 NC_006548.1 + 9549 0.66 0.603293
Target:  5'- -gACCGAAcCGUuGC-AUCaccaGGCGCCGAa -3'
miRNA:   3'- cgUGGCUU-GCAuCGcUAG----CCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 9594 0.72 0.296613
Target:  5'- uGCAUCGAGCGcGGCGcgccagguguccAUCGGgGUCGGg -3'
miRNA:   3'- -CGUGGCUUGCaUCGC------------UAGCCgCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 11756 0.68 0.484847
Target:  5'- -aGCUGGucaugcGCGgcGCGcggCGGCGCCGGg -3'
miRNA:   3'- cgUGGCU------UGCauCGCua-GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 12063 0.68 0.484847
Target:  5'- gGCGCCGAGCau-GCugGGUCGguGCGCUGAu -3'
miRNA:   3'- -CGUGGCUUGcauCG--CUAGC--CGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 12126 0.72 0.296613
Target:  5'- cGCACCG-ACccAGCaugcUCGGCGCCGGa -3'
miRNA:   3'- -CGUGGCuUGcaUCGcu--AGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 12177 0.7 0.387643
Target:  5'- uGguUCGAGCGgcgcaugcugAGUGGggacugUCGGCGCCGAu -3'
miRNA:   3'- -CguGGCUUGCa---------UCGCU------AGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 12273 1.11 0.000473
Target:  5'- aGCACCGAACGUAGCGAUCGGCGCCGAc -3'
miRNA:   3'- -CGUGGCUUGCAUCGCUAGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 12415 0.66 0.614378
Target:  5'- -gAUUGAACGgc-UGGUUGGUGCCGAg -3'
miRNA:   3'- cgUGGCUUGCaucGCUAGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 12609 0.72 0.289948
Target:  5'- aGCGCUcGACGgaaucgaaccaggccAGCuGGUCGGCGCCGGa -3'
miRNA:   3'- -CGUGGcUUGCa--------------UCG-CUAGCCGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.