Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30430 | 5' | -56.1 | NC_006548.1 | + | 5044 | 0.67 | 0.526891 |
Target: 5'- uGCACCaGAucGCGgcgcagGGUGGauuuacCGGCGCCGGa -3' miRNA: 3'- -CGUGG-CU--UGCa-----UCGCUa-----GCCGCGGCU- -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 12937 | 0.68 | 0.464431 |
Target: 5'- cGCGCUGAGCGcGGUGcugugCGGCGCa-- -3' miRNA: 3'- -CGUGGCUUGCaUCGCua---GCCGCGgcu -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 33962 | 0.68 | 0.474584 |
Target: 5'- cGCAgCUGuacCGUGGCGcUCGGcCGUCGAa -3' miRNA: 3'- -CGU-GGCuu-GCAUCGCuAGCC-GCGGCU- -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 12063 | 0.68 | 0.484847 |
Target: 5'- gGCGCCGAGCau-GCugGGUCGguGCGCUGAu -3' miRNA: 3'- -CGUGGCUUGcauCG--CUAGC--CGCGGCU- -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 19110 | 0.68 | 0.484847 |
Target: 5'- aGCACUGGACGUGcucaacGCGGgcagCGcaGCGCUGGg -3' miRNA: 3'- -CGUGGCUUGCAU------CGCUa---GC--CGCGGCU- -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 37847 | 0.67 | 0.505682 |
Target: 5'- uGCuCCGAACGUGGC---UGGUGCUGc -3' miRNA: 3'- -CGuGGCUUGCAUCGcuaGCCGCGGCu -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 9466 | 0.67 | 0.505682 |
Target: 5'- -aGCCGGucgAUGaGGCGuUCGGCGCCu- -3' miRNA: 3'- cgUGGCU---UGCaUCGCuAGCCGCGGcu -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 13273 | 0.67 | 0.513065 |
Target: 5'- cGCgGCUGggUGc-GCGAcuucaacaccgcccUCGGCGCCGGu -3' miRNA: 3'- -CG-UGGCuuGCauCGCU--------------AGCCGCGGCU- -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 3635 | 0.67 | 0.516243 |
Target: 5'- gGCGCUcAGCGUcaUGGUCGGgGCUGAa -3' miRNA: 3'- -CGUGGcUUGCAucGCUAGCCgCGGCU- -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 32076 | 0.68 | 0.454392 |
Target: 5'- -gGCCGGuCGaAGCGGUCGuuGCCGGc -3' miRNA: 3'- cgUGGCUuGCaUCGCUAGCcgCGGCU- -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 33551 | 0.69 | 0.419263 |
Target: 5'- -aGCUGAACGUcgacgucgagcgcuuGGCGAUCGacagcGCGCUGGg -3' miRNA: 3'- cgUGGCUUGCA---------------UCGCUAGC-----CGCGGCU- -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 12177 | 0.7 | 0.387643 |
Target: 5'- uGguUCGAGCGgcgcaugcugAGUGGggacugUCGGCGCCGAu -3' miRNA: 3'- -CguGGCUUGCa---------UCGCU------AGCCGCGGCU- -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 5132 | 0.75 | 0.189901 |
Target: 5'- uCGCCucgcGGACGUAGCGAaugUCGGgGCUGAc -3' miRNA: 3'- cGUGG----CUUGCAUCGCU---AGCCgCGGCU- -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 33729 | 0.73 | 0.231503 |
Target: 5'- aGUACgCGAugagcuucagugaucGCG-AGCGGUCGGuCGCCGAu -3' miRNA: 3'- -CGUG-GCU---------------UGCaUCGCUAGCC-GCGGCU- -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 28892 | 0.73 | 0.235193 |
Target: 5'- cCACCGGccaaacCGUcgaGGCGGcCGGCGCCGAg -3' miRNA: 3'- cGUGGCUu-----GCA---UCGCUaGCCGCGGCU- -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 22629 | 0.72 | 0.274853 |
Target: 5'- -uGCCGGaaGCGgaacugcGGCaGAUCGGUGCCGAu -3' miRNA: 3'- cgUGGCU--UGCa------UCG-CUAGCCGCGGCU- -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 20354 | 0.72 | 0.277679 |
Target: 5'- uGCGCCGccuGCGUGacuucuucgucgagcGCGAa-GGCGCCGAa -3' miRNA: 3'- -CGUGGCu--UGCAU---------------CGCUagCCGCGGCU- -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 9594 | 0.72 | 0.296613 |
Target: 5'- uGCAUCGAGCGcGGCGcgccagguguccAUCGGgGUCGGg -3' miRNA: 3'- -CGUGGCUUGCaUCGC------------UAGCCgCGGCU- -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 2231 | 0.71 | 0.31185 |
Target: 5'- aGCACCuGGuagGCGUAGcCGGUCagcuccGGCGCCGc -3' miRNA: 3'- -CGUGG-CU---UGCAUC-GCUAG------CCGCGGCu -5' |
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30430 | 5' | -56.1 | NC_006548.1 | + | 27193 | 0.71 | 0.335806 |
Target: 5'- -uGCCGAGCGUGcucGCGuccagcaggCGGCGaCCGAg -3' miRNA: 3'- cgUGGCUUGCAU---CGCua-------GCCGC-GGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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