miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30430 5' -56.1 NC_006548.1 + 37847 0.67 0.505682
Target:  5'- uGCuCCGAACGUGGC---UGGUGCUGc -3'
miRNA:   3'- -CGuGGCUUGCAUCGcuaGCCGCGGCu -5'
30430 5' -56.1 NC_006548.1 + 33962 0.68 0.474584
Target:  5'- cGCAgCUGuacCGUGGCGcUCGGcCGUCGAa -3'
miRNA:   3'- -CGU-GGCuu-GCAUCGCuAGCC-GCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 4764 0.77 0.136354
Target:  5'- gGCGCUucaggugcuuGAGCGUGGCGAUCGGCagGCUGu -3'
miRNA:   3'- -CGUGG----------CUUGCAUCGCUAGCCG--CGGCu -5'
30430 5' -56.1 NC_006548.1 + 12937 0.68 0.464431
Target:  5'- cGCGCUGAGCGcGGUGcugugCGGCGCa-- -3'
miRNA:   3'- -CGUGGCUUGCaUCGCua---GCCGCGgcu -5'
30430 5' -56.1 NC_006548.1 + 28892 0.73 0.235193
Target:  5'- cCACCGGccaaacCGUcgaGGCGGcCGGCGCCGAg -3'
miRNA:   3'- cGUGGCUu-----GCA---UCGCUaGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 22629 0.72 0.274853
Target:  5'- -uGCCGGaaGCGgaacugcGGCaGAUCGGUGCCGAu -3'
miRNA:   3'- cgUGGCU--UGCa------UCG-CUAGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 20354 0.72 0.277679
Target:  5'- uGCGCCGccuGCGUGacuucuucgucgagcGCGAa-GGCGCCGAa -3'
miRNA:   3'- -CGUGGCu--UGCAU---------------CGCUagCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 33729 0.73 0.231503
Target:  5'- aGUACgCGAugagcuucagugaucGCG-AGCGGUCGGuCGCCGAu -3'
miRNA:   3'- -CGUG-GCU---------------UGCaUCGCUAGCC-GCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 12063 0.68 0.484847
Target:  5'- gGCGCCGAGCau-GCugGGUCGguGCGCUGAu -3'
miRNA:   3'- -CGUGGCUUGcauCG--CUAGC--CGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 19110 0.68 0.484847
Target:  5'- aGCACUGGACGUGcucaacGCGGgcagCGcaGCGCUGGg -3'
miRNA:   3'- -CGUGGCUUGCAU------CGCUa---GC--CGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 5132 0.75 0.189901
Target:  5'- uCGCCucgcGGACGUAGCGAaugUCGGgGCUGAc -3'
miRNA:   3'- cGUGG----CUUGCAUCGCU---AGCCgCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 9466 0.67 0.505682
Target:  5'- -aGCCGGucgAUGaGGCGuUCGGCGCCu- -3'
miRNA:   3'- cgUGGCU---UGCaUCGCuAGCCGCGGcu -5'
30430 5' -56.1 NC_006548.1 + 13273 0.67 0.513065
Target:  5'- cGCgGCUGggUGc-GCGAcuucaacaccgcccUCGGCGCCGGu -3'
miRNA:   3'- -CG-UGGCuuGCauCGCU--------------AGCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 3635 0.67 0.516243
Target:  5'- gGCGCUcAGCGUcaUGGUCGGgGCUGAa -3'
miRNA:   3'- -CGUGGcUUGCAucGCUAGCCgCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 5044 0.67 0.526891
Target:  5'- uGCACCaGAucGCGgcgcagGGUGGauuuacCGGCGCCGGa -3'
miRNA:   3'- -CGUGG-CU--UGCa-----UCGCUa-----GCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 36292 0.67 0.537621
Target:  5'- gGCACUGAGCGauGCaGAUCuGGCGCa-- -3'
miRNA:   3'- -CGUGGCUUGCauCG-CUAG-CCGCGgcu -5'
30430 5' -56.1 NC_006548.1 + 35217 0.67 0.548425
Target:  5'- cCGCUGGACGUcaUGuUCGGCGCCc- -3'
miRNA:   3'- cGUGGCUUGCAucGCuAGCCGCGGcu -5'
30430 5' -56.1 NC_006548.1 + 5583 0.66 0.581209
Target:  5'- cGgGCCGGcuuGCGcaacugguUGGCGAU-GGCGUCGAg -3'
miRNA:   3'- -CgUGGCU---UGC--------AUCGCUAgCCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 32558 0.66 0.592234
Target:  5'- -aACCGGaucaccGCGUGGCcGUUuGCGCCGGa -3'
miRNA:   3'- cgUGGCU------UGCAUCGcUAGcCGCGGCU- -5'
30430 5' -56.1 NC_006548.1 + 8158 0.66 0.599972
Target:  5'- gGCACUGugcuccgucAugGUGGCGAUguucugguugauagCGGCGCUa- -3'
miRNA:   3'- -CGUGGC---------UugCAUCGCUA--------------GCCGCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.