Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30441 | 3' | -62.6 | NC_006548.1 | + | 17767 | 0.67 | 0.237931 |
Target: 5'- aGgAGagUCCGCC-GUAUGCgGcGCGGGUg -3' miRNA: 3'- -CgUCg-AGGCGGaCGUACGgC-CGCCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 18790 | 0.67 | 0.231902 |
Target: 5'- aGCAGCaCgGCCUGCG-GCUgGGCGaGGa -3' miRNA: 3'- -CGUCGaGgCGGACGUaCGG-CCGC-CCg -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 20134 | 0.67 | 0.220231 |
Target: 5'- uGCGGCUCgGCauagaGCAUGCCGuCGcGCa -3' miRNA: 3'- -CGUCGAGgCGga---CGUACGGCcGCcCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 20526 | 0.66 | 0.250382 |
Target: 5'- aGCAGCcucugCCGCCgcUGCGgaagaGCCG-CaGGGCa -3' miRNA: 3'- -CGUCGa----GGCGG--ACGUa----CGGCcG-CCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 20789 | 0.67 | 0.214586 |
Target: 5'- -aGGCcggCCGCCUGC-UGCCGcGCcagaaGGCu -3' miRNA: 3'- cgUCGa--GGCGGACGuACGGC-CGc----CCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 21244 | 0.67 | 0.224258 |
Target: 5'- gGCGGCcaggCCGuCCgaGC-UGCCauggaucacgauacGGCGGGCg -3' miRNA: 3'- -CGUCGa---GGC-GGa-CGuACGG--------------CCGCCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 21824 | 0.68 | 0.188193 |
Target: 5'- cGguGCguugucgauaUCCGCCUGCGgcaCCGGCGcguccaGGCc -3' miRNA: 3'- -CguCG----------AGGCGGACGUac-GGCCGC------CCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 22684 | 0.69 | 0.160329 |
Target: 5'- cGCAGUUCCGCUuccgGCAguUCGGCGaGCg -3' miRNA: 3'- -CGUCGAGGCGGa---CGUacGGCCGCcCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 22698 | 0.68 | 0.192723 |
Target: 5'- aGCAGCUCguCGCUgccauucagGCgcagaaggugcucGUGCCGGCcGGCg -3' miRNA: 3'- -CGUCGAG--GCGGa--------CG-------------UACGGCCGcCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 22768 | 0.66 | 0.27689 |
Target: 5'- aGCGGCggagUCGCCuuUGCGgaucGCCgacgaGGCcGGGCg -3' miRNA: 3'- -CGUCGa---GGCGG--ACGUa---CGG-----CCG-CCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 23800 | 0.76 | 0.050943 |
Target: 5'- -aAGC-CCGCCgGcCAUGCCGGUGGcGCg -3' miRNA: 3'- cgUCGaGGCGGaC-GUACGGCCGCC-CG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 23869 | 0.78 | 0.035036 |
Target: 5'- cCGGgUCgCGCCaccgGCAUgGCCGGCGGGCu -3' miRNA: 3'- cGUCgAG-GCGGa---CGUA-CGGCCGCCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 24029 | 0.66 | 0.276889 |
Target: 5'- gGCAGUcgcgagCGCCUGCcagGCCGGgCGGuGUc -3' miRNA: 3'- -CGUCGag----GCGGACGua-CGGCC-GCC-CG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 24439 | 0.66 | 0.244091 |
Target: 5'- -gGGCaaCCGCCUGCAauaugGCCGcuugcaGCGcGGCa -3' miRNA: 3'- cgUCGa-GGCGGACGUa----CGGC------CGC-CCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 25152 | 0.66 | 0.256806 |
Target: 5'- uGCAGgucaUCCGCCccUGgAUcggugGCCggGGCGGGCu -3' miRNA: 3'- -CGUCg---AGGCGG--ACgUA-----CGG--CCGCCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 25856 | 0.71 | 0.122077 |
Target: 5'- gGCGGaugucaCCGCCUGCuggcCCGcGCGGGCc -3' miRNA: 3'- -CGUCga----GGCGGACGuac-GGC-CGCCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 27104 | 0.67 | 0.209064 |
Target: 5'- uGCAGCgaggCCGCCacCAUgGCCcugauGCGGGCc -3' miRNA: 3'- -CGUCGa---GGCGGacGUA-CGGc----CGCCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 27525 | 0.66 | 0.27689 |
Target: 5'- gGCuGCUguUCGCCgGCAUcGCCGGUuacGGCc -3' miRNA: 3'- -CGuCGA--GGCGGaCGUA-CGGCCGc--CCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 27909 | 0.66 | 0.250382 |
Target: 5'- uGCAGCUCgGCCagcGCGUucCCGGCGcGUu -3' miRNA: 3'- -CGUCGAGgCGGa--CGUAc-GGCCGCcCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 27974 | 0.66 | 0.27689 |
Target: 5'- aGCAGCUCaGCgaGUG-GCUGGaaaaGGGCc -3' miRNA: 3'- -CGUCGAGgCGgaCGUaCGGCCg---CCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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