miRNA display CGI


Results 21 - 29 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30442 5' -50.8 NC_006548.1 + 15240 0.72 0.482957
Target:  5'- gCAGGGCGAacucguccaggauGCGUccgccgcgcuugcCGGCCUGCGcGUCc -3'
miRNA:   3'- aGUUCCGCU-------------UGUA-------------GCCGGACGUuUAG- -5'
30442 5' -50.8 NC_006548.1 + 15047 0.73 0.452836
Target:  5'- uUCAAGGa--ACAggCGcGCCUGCAGGUCa -3'
miRNA:   3'- -AGUUCCgcuUGUa-GC-CGGACGUUUAG- -5'
30442 5' -50.8 NC_006548.1 + 13695 0.7 0.599371
Target:  5'- uUCGccAGGCGuGCcuggucUUGGCUUGCGAAUCg -3'
miRNA:   3'- -AGU--UCCGCuUGu-----AGCCGGACGUUUAG- -5'
30442 5' -50.8 NC_006548.1 + 10980 0.69 0.670009
Target:  5'- aUCAuGGCcuguGCGUCGGUCaUGCGAAUUu -3'
miRNA:   3'- -AGUuCCGcu--UGUAGCCGG-ACGUUUAG- -5'
30442 5' -50.8 NC_006548.1 + 9011 0.73 0.411657
Target:  5'- aCAGGGCGAGCG-CGGCaccCAGGUCu -3'
miRNA:   3'- aGUUCCGCUUGUaGCCGgacGUUUAG- -5'
30442 5' -50.8 NC_006548.1 + 7366 0.7 0.572461
Target:  5'- cCAGGGCGGccAUAUCGGCCcccacccagucgggUGCcuGGUCg -3'
miRNA:   3'- aGUUCCGCU--UGUAGCCGG--------------ACGu-UUAG- -5'
30442 5' -50.8 NC_006548.1 + 6845 0.67 0.76135
Target:  5'- -uGGGGCGAACAagaaggcuagCGGCCUaCAGGUg -3'
miRNA:   3'- agUUCCGCUUGUa---------GCCGGAcGUUUAg -5'
30442 5' -50.8 NC_006548.1 + 3485 0.73 0.442329
Target:  5'- aCAGGGUGAcGCgAUCGaCCUGCAGAUUg -3'
miRNA:   3'- aGUUCCGCU-UG-UAGCcGGACGUUUAG- -5'
30442 5' -50.8 NC_006548.1 + 1668 0.71 0.529841
Target:  5'- cCGGGGCGGAgagaguUAUCGGCUggGCAcAUCg -3'
miRNA:   3'- aGUUCCGCUU------GUAGCCGGa-CGUuUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.