Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30445 | 3' | -58.3 | NC_006548.1 | + | 18591 | 1.12 | 0.000197 |
Target: 5'- gUGACAGCGUGCCGACAUGGACCCGGCg -3' miRNA: 3'- -ACUGUCGCACGGCUGUACCUGGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 14533 | 0.73 | 0.168769 |
Target: 5'- aGGCuGGUGaUGaaGAgAUGGACCCGGCu -3' miRNA: 3'- aCUG-UCGC-ACggCUgUACCUGGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 16036 | 0.71 | 0.215096 |
Target: 5'- cUGACGGCcaUGCCGACGaguucugggcgcUGGGUCUGGCg -3' miRNA: 3'- -ACUGUCGc-ACGGCUGU------------ACCUGGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 14389 | 0.71 | 0.215096 |
Target: 5'- gGGCAGCucGCCGGCuucGGCCUGGCu -3' miRNA: 3'- aCUGUCGcaCGGCUGuacCUGGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 24381 | 0.71 | 0.215096 |
Target: 5'- gGGCAgGCGcucGCCGGCccaGACCCGGCc -3' miRNA: 3'- aCUGU-CGCa--CGGCUGuacCUGGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 6613 | 0.7 | 0.245289 |
Target: 5'- -cACGGCGUGCCacgcauccuGAUgAUGGACCCuGGUu -3' miRNA: 3'- acUGUCGCACGG---------CUG-UACCUGGG-CCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 23195 | 0.7 | 0.247851 |
Target: 5'- cGACAGCGaacugcucgaugccuUGCUG-CGUGGAUugCCGGUa -3' miRNA: 3'- aCUGUCGC---------------ACGGCuGUACCUG--GGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 3600 | 0.7 | 0.251735 |
Target: 5'- cGAgAGcCGUGCCuGACGcaacUGGugCCGGg -3' miRNA: 3'- aCUgUC-GCACGG-CUGU----ACCugGGCCg -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 19295 | 0.7 | 0.251735 |
Target: 5'- cGACaagggcugccaaGGCGUGCCGuCAggcgauaccUGGGCCUGGa -3' miRNA: 3'- aCUG------------UCGCACGGCuGU---------ACCUGGGCCg -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 5538 | 0.7 | 0.251735 |
Target: 5'- cUGGCucgAGCG-GUCGACcUGaGCCCGGCg -3' miRNA: 3'- -ACUG---UCGCaCGGCUGuACcUGGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 5151 | 0.7 | 0.265044 |
Target: 5'- aUGACGGCuuucuUGCgGugGUGGGugagUCCGGCg -3' miRNA: 3'- -ACUGUCGc----ACGgCugUACCU----GGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 36546 | 0.7 | 0.27191 |
Target: 5'- gGACaAGCGUgacGCUGACGcUGGucaggcCCCGGCc -3' miRNA: 3'- aCUG-UCGCA---CGGCUGU-ACCu-----GGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 36875 | 0.7 | 0.27191 |
Target: 5'- -uACGGUGUGCUGACcgugucGUGGGCgcaccgcaaCCGGCu -3' miRNA: 3'- acUGUCGCACGGCUG------UACCUG---------GGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 37393 | 0.69 | 0.278918 |
Target: 5'- cGGCAGCGUGgCGACGcgccccuuGACgaCCGGCu -3' miRNA: 3'- aCUGUCGCACgGCUGUac------CUG--GGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 32460 | 0.69 | 0.300803 |
Target: 5'- gGACuguGGcCGUGUCGACGgaUGGACCgcCGGUa -3' miRNA: 3'- aCUG---UC-GCACGGCUGU--ACCUGG--GCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 36705 | 0.69 | 0.316115 |
Target: 5'- aGAuCAGCGcGCCGGCcucAUGcGGCgCUGGCa -3' miRNA: 3'- aCU-GUCGCaCGGCUG---UAC-CUG-GGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 27586 | 0.69 | 0.316115 |
Target: 5'- --cCGGCGaUGCCGGCGaacagcagccccUGGACCCGuCg -3' miRNA: 3'- acuGUCGC-ACGGCUGU------------ACCUGGGCcG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 12956 | 0.68 | 0.348482 |
Target: 5'- -uGCGGCGcaGCCGugGU-GACCaCGGCu -3' miRNA: 3'- acUGUCGCa-CGGCugUAcCUGG-GCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 34447 | 0.68 | 0.356934 |
Target: 5'- -aACAGCGaggUGCCGcccACAaGGACCaGGCg -3' miRNA: 3'- acUGUCGC---ACGGC---UGUaCCUGGgCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 24004 | 0.68 | 0.36553 |
Target: 5'- gGGCGGUGUccaGCCGAUcaGGGCCUuGCg -3' miRNA: 3'- aCUGUCGCA---CGGCUGuaCCUGGGcCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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