miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30445 3' -58.3 NC_006548.1 + 14533 0.73 0.168769
Target:  5'- aGGCuGGUGaUGaaGAgAUGGACCCGGCu -3'
miRNA:   3'- aCUG-UCGC-ACggCUgUACCUGGGCCG- -5'
30445 3' -58.3 NC_006548.1 + 8272 0.66 0.458969
Target:  5'- aGAUcaUGgaGCCGGCAgcGACCCGGCg -3'
miRNA:   3'- aCUGucGCa-CGGCUGUacCUGGGCCG- -5'
30445 3' -58.3 NC_006548.1 + 18493 0.66 0.43925
Target:  5'- cGAUAGCGUcGCCa--AU-GACCCGGUc -3'
miRNA:   3'- aCUGUCGCA-CGGcugUAcCUGGGCCG- -5'
30445 3' -58.3 NC_006548.1 + 8328 0.67 0.401314
Target:  5'- cGGCuGaCGUGauCCG-CAUGGGCCUGGg -3'
miRNA:   3'- aCUGuC-GCAC--GGCuGUACCUGGGCCg -5'
30445 3' -58.3 NC_006548.1 + 9274 0.67 0.392161
Target:  5'- gGACGGCcuaGCCGACGaucUGGAgaCgCUGGCg -3'
miRNA:   3'- aCUGUCGca-CGGCUGU---ACCU--G-GGCCG- -5'
30445 3' -58.3 NC_006548.1 + 33907 0.67 0.383145
Target:  5'- cGGCcaGGCcaGUGCCGACAucaugauguuacUGG-CCCGaGCg -3'
miRNA:   3'- aCUG--UCG--CACGGCUGU------------ACCuGGGC-CG- -5'
30445 3' -58.3 NC_006548.1 + 14097 0.67 0.374267
Target:  5'- cGGCaAGUGguucGCCGAUuu-GACCCGGUa -3'
miRNA:   3'- aCUG-UCGCa---CGGCUGuacCUGGGCCG- -5'
30445 3' -58.3 NC_006548.1 + 12956 0.68 0.348482
Target:  5'- -uGCGGCGcaGCCGugGU-GACCaCGGCu -3'
miRNA:   3'- acUGUCGCa-CGGCugUAcCUGG-GCCG- -5'
30445 3' -58.3 NC_006548.1 + 32460 0.69 0.300803
Target:  5'- gGACuguGGcCGUGUCGACGgaUGGACCgcCGGUa -3'
miRNA:   3'- aCUG---UC-GCACGGCUGU--ACCUGG--GCCG- -5'
30445 3' -58.3 NC_006548.1 + 36875 0.7 0.27191
Target:  5'- -uACGGUGUGCUGACcgugucGUGGGCgcaccgcaaCCGGCu -3'
miRNA:   3'- acUGUCGCACGGCUG------UACCUG---------GGCCG- -5'
30445 3' -58.3 NC_006548.1 + 23195 0.7 0.247851
Target:  5'- cGACAGCGaacugcucgaugccuUGCUG-CGUGGAUugCCGGUa -3'
miRNA:   3'- aCUGUCGC---------------ACGGCuGUACCUG--GGCCG- -5'
30445 3' -58.3 NC_006548.1 + 16036 0.71 0.215096
Target:  5'- cUGACGGCcaUGCCGACGaguucugggcgcUGGGUCUGGCg -3'
miRNA:   3'- -ACUGUCGc-ACGGCUGU------------ACCUGGGCCG- -5'
30445 3' -58.3 NC_006548.1 + 5151 0.7 0.265044
Target:  5'- aUGACGGCuuucuUGCgGugGUGGGugagUCCGGCg -3'
miRNA:   3'- -ACUGUCGc----ACGgCugUACCU----GGGCCG- -5'
30445 3' -58.3 NC_006548.1 + 3600 0.7 0.251735
Target:  5'- cGAgAGcCGUGCCuGACGcaacUGGugCCGGg -3'
miRNA:   3'- aCUgUC-GCACGG-CUGU----ACCugGGCCg -5'
30445 3' -58.3 NC_006548.1 + 5538 0.7 0.251735
Target:  5'- cUGGCucgAGCG-GUCGACcUGaGCCCGGCg -3'
miRNA:   3'- -ACUG---UCGCaCGGCUGuACcUGGGCCG- -5'
30445 3' -58.3 NC_006548.1 + 19295 0.7 0.251735
Target:  5'- cGACaagggcugccaaGGCGUGCCGuCAggcgauaccUGGGCCUGGa -3'
miRNA:   3'- aCUG------------UCGCACGGCuGU---------ACCUGGGCCg -5'
30445 3' -58.3 NC_006548.1 + 6613 0.7 0.245289
Target:  5'- -cACGGCGUGCCacgcauccuGAUgAUGGACCCuGGUu -3'
miRNA:   3'- acUGUCGCACGG---------CUG-UACCUGGG-CCG- -5'
30445 3' -58.3 NC_006548.1 + 14389 0.71 0.215096
Target:  5'- gGGCAGCucGCCGGCuucGGCCUGGCu -3'
miRNA:   3'- aCUGUCGcaCGGCUGuacCUGGGCCG- -5'
30445 3' -58.3 NC_006548.1 + 24381 0.71 0.215096
Target:  5'- gGGCAgGCGcucGCCGGCccaGACCCGGCc -3'
miRNA:   3'- aCUGU-CGCa--CGGCUGuacCUGGGCCG- -5'
30445 3' -58.3 NC_006548.1 + 4351 0.66 0.469004
Target:  5'- -uGCAcCGUGCUGACGccGGAgCUGGCc -3'
miRNA:   3'- acUGUcGCACGGCUGUa-CCUgGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.