Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30445 | 3' | -58.3 | NC_006548.1 | + | 2748 | 0.67 | 0.392161 |
Target: 5'- uUGGCAGCGUGCaauGCA-GG-CCauCGGCg -3' miRNA: 3'- -ACUGUCGCACGgc-UGUaCCuGG--GCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 3600 | 0.7 | 0.251735 |
Target: 5'- cGAgAGcCGUGCCuGACGcaacUGGugCCGGg -3' miRNA: 3'- aCUgUC-GCACGG-CUGU----ACCugGGCCg -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 4351 | 0.66 | 0.469004 |
Target: 5'- -uGCAcCGUGCUGACGccGGAgCUGGCc -3' miRNA: 3'- acUGUcGCACGGCUGUa-CCUgGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 5151 | 0.7 | 0.265044 |
Target: 5'- aUGACGGCuuucuUGCgGugGUGGGugagUCCGGCg -3' miRNA: 3'- -ACUGUCGc----ACGgCugUACCU----GGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 5538 | 0.7 | 0.251735 |
Target: 5'- cUGGCucgAGCG-GUCGACcUGaGCCCGGCg -3' miRNA: 3'- -ACUG---UCGCaCGGCUGuACcUGGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 6011 | 0.66 | 0.429573 |
Target: 5'- gGGCAGaCGUucaGCCGuCAggcUGaGACuCCGGCg -3' miRNA: 3'- aCUGUC-GCA---CGGCuGU---AC-CUG-GGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 6613 | 0.7 | 0.245289 |
Target: 5'- -cACGGCGUGCCacgcauccuGAUgAUGGACCCuGGUu -3' miRNA: 3'- acUGUCGCACGG---------CUG-UACCUGGG-CCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 7435 | 0.67 | 0.374267 |
Target: 5'- cGACugGGUGgggGCCGAUAUGGccGCCCuGGa -3' miRNA: 3'- aCUG--UCGCa--CGGCUGUACC--UGGG-CCg -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 8213 | 0.67 | 0.374267 |
Target: 5'- aUGACGGagcacaGUGCCGAgguCAUGGcGCaguuCGGCg -3' miRNA: 3'- -ACUGUCg-----CACGGCU---GUACC-UGg---GCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 8272 | 0.66 | 0.458969 |
Target: 5'- aGAUcaUGgaGCCGGCAgcGACCCGGCg -3' miRNA: 3'- aCUGucGCa-CGGCUGUacCUGGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 8328 | 0.67 | 0.401314 |
Target: 5'- cGGCuGaCGUGauCCG-CAUGGGCCUGGg -3' miRNA: 3'- aCUGuC-GCAC--GGCuGUACCUGGGCCg -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 9274 | 0.67 | 0.392161 |
Target: 5'- gGACGGCcuaGCCGACGaucUGGAgaCgCUGGCg -3' miRNA: 3'- aCUGUCGca-CGGCUGU---ACCU--G-GGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 12956 | 0.68 | 0.348482 |
Target: 5'- -uGCGGCGcaGCCGugGU-GACCaCGGCu -3' miRNA: 3'- acUGUCGCa-CGGCugUAcCUGG-GCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 14097 | 0.67 | 0.374267 |
Target: 5'- cGGCaAGUGguucGCCGAUuu-GACCCGGUa -3' miRNA: 3'- aCUG-UCGCa---CGGCUGuacCUGGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 14389 | 0.71 | 0.215096 |
Target: 5'- gGGCAGCucGCCGGCuucGGCCUGGCu -3' miRNA: 3'- aCUGUCGcaCGGCUGuacCUGGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 14533 | 0.73 | 0.168769 |
Target: 5'- aGGCuGGUGaUGaaGAgAUGGACCCGGCu -3' miRNA: 3'- aCUG-UCGC-ACggCUgUACCUGGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 16036 | 0.71 | 0.215096 |
Target: 5'- cUGACGGCcaUGCCGACGaguucugggcgcUGGGUCUGGCg -3' miRNA: 3'- -ACUGUCGc-ACGGCUGU------------ACCUGGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 18493 | 0.66 | 0.43925 |
Target: 5'- cGAUAGCGUcGCCa--AU-GACCCGGUc -3' miRNA: 3'- aCUGUCGCA-CGGcugUAcCUGGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 18591 | 1.12 | 0.000197 |
Target: 5'- gUGACAGCGUGCCGACAUGGACCCGGCg -3' miRNA: 3'- -ACUGUCGCACGGCUGUACCUGGGCCG- -5' |
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30445 | 3' | -58.3 | NC_006548.1 | + | 19295 | 0.7 | 0.251735 |
Target: 5'- cGACaagggcugccaaGGCGUGCCGuCAggcgauaccUGGGCCUGGa -3' miRNA: 3'- aCUG------------UCGCACGGCuGU---------ACCUGGGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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