miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30447 5' -58.2 NC_006548.1 + 20102 1.1 0.000214
Target:  5'- cUCCAGACCCUUGGCCCAGCCAUAGGCc -3'
miRNA:   3'- -AGGUCUGGGAACCGGGUCGGUAUCCG- -5'
30447 5' -58.2 NC_006548.1 + 17671 0.75 0.099804
Target:  5'- cUCCAGcCCCUcGGCCaUGGCC-UGGGCg -3'
miRNA:   3'- -AGGUCuGGGAaCCGG-GUCGGuAUCCG- -5'
30447 5' -58.2 NC_006548.1 + 25758 0.75 0.105714
Target:  5'- cCCAGugCCa--GCCCAGCCA-AGGCc -3'
miRNA:   3'- aGGUCugGGaacCGGGUCGGUaUCCG- -5'
30447 5' -58.2 NC_006548.1 + 18721 0.74 0.118534
Target:  5'- -gCAGAUCCUc-GCCCAGCCGcAGGCc -3'
miRNA:   3'- agGUCUGGGAacCGGGUCGGUaUCCG- -5'
30447 5' -58.2 NC_006548.1 + 34951 0.73 0.144499
Target:  5'- aCCGGugCCa--GUCCaAGCCAUGGGCa -3'
miRNA:   3'- aGGUCugGGaacCGGG-UCGGUAUCCG- -5'
30447 5' -58.2 NC_006548.1 + 19540 0.73 0.157146
Target:  5'- aUCCAGAUgCc-GGCUCGGCCAU-GGCu -3'
miRNA:   3'- -AGGUCUGgGaaCCGGGUCGGUAuCCG- -5'
30447 5' -58.2 NC_006548.1 + 26182 0.72 0.185474
Target:  5'- uUCCAcAUCCgccGGCaCCGGCCGUAGGa -3'
miRNA:   3'- -AGGUcUGGGaa-CCG-GGUCGGUAUCCg -5'
30447 5' -58.2 NC_006548.1 + 12342 0.71 0.190093
Target:  5'- aUCCGGccGCCCUcGGCaccaaCCAGCCGUucaauccAGGCu -3'
miRNA:   3'- -AGGUC--UGGGAaCCG-----GGUCGGUA-------UCCG- -5'
30447 5' -58.2 NC_006548.1 + 16833 0.71 0.218212
Target:  5'- gCCaauGGGCCa--GGCCCAGuCCAUAGGg -3'
miRNA:   3'- aGG---UCUGGgaaCCGGGUC-GGUAUCCg -5'
30447 5' -58.2 NC_006548.1 + 28051 0.7 0.236364
Target:  5'- --gAGGCCUaUGGUCCAGCCucacagcAGGCg -3'
miRNA:   3'- aggUCUGGGaACCGGGUCGGua-----UCCG- -5'
30447 5' -58.2 NC_006548.1 + 1960 0.7 0.249157
Target:  5'- aCCAGGCCg-UGGCUCGGCUuacucaggGGGUg -3'
miRNA:   3'- aGGUCUGGgaACCGGGUCGGua------UCCG- -5'
30447 5' -58.2 NC_006548.1 + 16113 0.69 0.262516
Target:  5'- gCCAGACCCagcGCCCAGaacuCGUcGGCa -3'
miRNA:   3'- aGGUCUGGGaacCGGGUCg---GUAuCCG- -5'
30447 5' -58.2 NC_006548.1 + 32814 0.69 0.269411
Target:  5'- cCCAGAUCCgcccGcCCCAGCCugcaAGGCu -3'
miRNA:   3'- aGGUCUGGGaac-C-GGGUCGGua--UCCG- -5'
30447 5' -58.2 NC_006548.1 + 20862 0.69 0.283639
Target:  5'- aCCGGAgCCUucUGGCgCGGCagcAGGCg -3'
miRNA:   3'- aGGUCUgGGA--ACCGgGUCGguaUCCG- -5'
30447 5' -58.2 NC_006548.1 + 15097 0.69 0.290973
Target:  5'- cCCAGAUCCUUGGC--GGCCu--GGUu -3'
miRNA:   3'- aGGUCUGGGAACCGggUCGGuauCCG- -5'
30447 5' -58.2 NC_006548.1 + 32133 0.69 0.301488
Target:  5'- aCCAGgacaucACCCUgGGCUCGGCCAgcgccucgaccuuGGCu -3'
miRNA:   3'- aGGUC------UGGGAaCCGGGUCGGUau-----------CCG- -5'
30447 5' -58.2 NC_006548.1 + 17609 0.68 0.306083
Target:  5'- cCCAGGCCa-UGGCCgaggGGCUggAGGCa -3'
miRNA:   3'- aGGUCUGGgaACCGGg---UCGGuaUCCG- -5'
30447 5' -58.2 NC_006548.1 + 1175 0.68 0.306083
Target:  5'- aCCAGACCUUcgGGUUCAcGCCAggagccGGCu -3'
miRNA:   3'- aGGUCUGGGAa-CCGGGU-CGGUau----CCG- -5'
30447 5' -58.2 NC_006548.1 + 28761 0.68 0.313861
Target:  5'- -gCAG-CCC--GGCCCuuGCCGUAGGUc -3'
miRNA:   3'- agGUCuGGGaaCCGGGu-CGGUAUCCG- -5'
30447 5' -58.2 NC_006548.1 + 20034 0.68 0.321788
Target:  5'- gCCGG-CCUaUGGCUgGGCCAaGGGUc -3'
miRNA:   3'- aGGUCuGGGaACCGGgUCGGUaUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.