Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30447 | 5' | -58.2 | NC_006548.1 | + | 25758 | 0.75 | 0.105714 |
Target: 5'- cCCAGugCCa--GCCCAGCCA-AGGCc -3' miRNA: 3'- aGGUCugGGaacCGGGUCGGUaUCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 13938 | 0.67 | 0.354979 |
Target: 5'- uUCUAcuGACCCUgaacaauGCUCGGCCgGUGGGCc -3' miRNA: 3'- -AGGU--CUGGGAac-----CGGGUCGG-UAUCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 613 | 0.67 | 0.354979 |
Target: 5'- cCCAGGCCC-UGGCagAGCCGauccacuucGGCg -3' miRNA: 3'- aGGUCUGGGaACCGggUCGGUau-------CCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 17078 | 0.67 | 0.354979 |
Target: 5'- gCCAGguggcgaguACCCagGGCacccCCGGCCGUcuGGGCa -3' miRNA: 3'- aGGUC---------UGGGaaCCG----GGUCGGUA--UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 13073 | 0.67 | 0.381412 |
Target: 5'- cCCAGGCCCUucaggacgcccUGGUCCAGUacaagcagcAGGUc -3' miRNA: 3'- aGGUCUGGGA-----------ACCGGGUCGgua------UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 3140 | 0.67 | 0.399749 |
Target: 5'- aCCAGGcgcCCCUUGGCguCCAuGCgGUAcccGGCg -3' miRNA: 3'- aGGUCU---GGGAACCG--GGU-CGgUAU---CCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 14231 | 0.67 | 0.399749 |
Target: 5'- aCCGGACCa--GGUCCGgGCCuacaucgagGGGCg -3' miRNA: 3'- aGGUCUGGgaaCCGGGU-CGGua-------UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 27887 | 0.66 | 0.427315 |
Target: 5'- gUCCAGACCCagGagcuaguucugcaGCUCGGCCAgcgcguucccGGCg -3' miRNA: 3'- -AGGUCUGGGaaC-------------CGGGUCGGUau--------CCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 15585 | 0.66 | 0.438062 |
Target: 5'- -gCAGACCgCUaacUGGCagCAGCCcgaGGGCg -3' miRNA: 3'- agGUCUGG-GA---ACCGg-GUCGGua-UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 2395 | 0.67 | 0.354979 |
Target: 5'- gCCGGcuggaACCC-UGGCuucgCCAGCCAUGcuGGCc -3' miRNA: 3'- aGGUC-----UGGGaACCG----GGUCGGUAU--CCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 30237 | 0.68 | 0.34646 |
Target: 5'- cCCAGACC--UGGUCgCGGCU--GGGCa -3' miRNA: 3'- aGGUCUGGgaACCGG-GUCGGuaUCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 18721 | 0.74 | 0.118534 |
Target: 5'- -gCAGAUCCUc-GCCCAGCCGcAGGCc -3' miRNA: 3'- agGUCUGGGAacCGGGUCGGUaUCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 19540 | 0.73 | 0.157146 |
Target: 5'- aUCCAGAUgCc-GGCUCGGCCAU-GGCu -3' miRNA: 3'- -AGGUCUGgGaaCCGGGUCGGUAuCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 12342 | 0.71 | 0.190093 |
Target: 5'- aUCCGGccGCCCUcGGCaccaaCCAGCCGUucaauccAGGCu -3' miRNA: 3'- -AGGUC--UGGGAaCCG-----GGUCGGUA-------UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 28051 | 0.7 | 0.236364 |
Target: 5'- --gAGGCCUaUGGUCCAGCCucacagcAGGCg -3' miRNA: 3'- aggUCUGGGaACCGGGUCGGua-----UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 32133 | 0.69 | 0.301488 |
Target: 5'- aCCAGgacaucACCCUgGGCUCGGCCAgcgccucgaccuuGGCu -3' miRNA: 3'- aGGUC------UGGGAaCCGGGUCGGUau-----------CCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 1175 | 0.68 | 0.306083 |
Target: 5'- aCCAGACCUUcgGGUUCAcGCCAggagccGGCu -3' miRNA: 3'- aGGUCUGGGAa-CCGGGU-CGGUau----CCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 17609 | 0.68 | 0.306083 |
Target: 5'- cCCAGGCCa-UGGCCgaggGGCUggAGGCa -3' miRNA: 3'- aGGUCUGGgaACCGGg---UCGGuaUCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 20034 | 0.68 | 0.321788 |
Target: 5'- gCCGG-CCUaUGGCUgGGCCAaGGGUc -3' miRNA: 3'- aGGUCuGGGaACCGGgUCGGUaUCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 30398 | 0.66 | 0.447965 |
Target: 5'- gUCGGugCC---GCCCAgGCCAgGGGCg -3' miRNA: 3'- aGGUCugGGaacCGGGU-CGGUaUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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