Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30447 | 5' | -58.2 | NC_006548.1 | + | 613 | 0.67 | 0.354979 |
Target: 5'- cCCAGGCCC-UGGCagAGCCGauccacuucGGCg -3' miRNA: 3'- aGGUCUGGGaACCGggUCGGUau-------CCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 869 | 0.67 | 0.399749 |
Target: 5'- gCCAGuuGCCCgccgaGGUCCAgGUCAUcgAGGCg -3' miRNA: 3'- aGGUC--UGGGaa---CCGGGU-CGGUA--UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 1175 | 0.68 | 0.306083 |
Target: 5'- aCCAGACCUUcgGGUUCAcGCCAggagccGGCu -3' miRNA: 3'- aGGUCUGGGAa-CCGGGU-CGGUau----CCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 1960 | 0.7 | 0.249157 |
Target: 5'- aCCAGGCCg-UGGCUCGGCUuacucaggGGGUg -3' miRNA: 3'- aGGUCUGGgaACCGGGUCGGua------UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 2395 | 0.67 | 0.354979 |
Target: 5'- gCCGGcuggaACCC-UGGCuucgCCAGCCAUGcuGGCc -3' miRNA: 3'- aGGUC-----UGGGaACCG----GGUCGGUAU--CCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 3140 | 0.67 | 0.399749 |
Target: 5'- aCCAGGcgcCCCUUGGCguCCAuGCgGUAcccGGCg -3' miRNA: 3'- aGGUCU---GGGAACCG--GGU-CGgUAU---CCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 6598 | 0.67 | 0.398819 |
Target: 5'- aUCCugaugauGGACCC-UGGUUCGGCCAacaucucGGCg -3' miRNA: 3'- -AGG-------UCUGGGaACCGGGUCGGUau-----CCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 11948 | 0.66 | 0.417682 |
Target: 5'- gCCAGGCaCCUacgaccuccagguUGGCCgAGCauuCAUgcGGGCg -3' miRNA: 3'- aGGUCUG-GGA-------------ACCGGgUCG---GUA--UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 12342 | 0.71 | 0.190093 |
Target: 5'- aUCCGGccGCCCUcGGCaccaaCCAGCCGUucaauccAGGCu -3' miRNA: 3'- -AGGUC--UGGGAaCCG-----GGUCGGUA-------UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 13073 | 0.67 | 0.381412 |
Target: 5'- cCCAGGCCCUucaggacgcccUGGUCCAGUacaagcagcAGGUc -3' miRNA: 3'- aGGUCUGGGA-----------ACCGGGUCGgua------UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 13938 | 0.67 | 0.354979 |
Target: 5'- uUCUAcuGACCCUgaacaauGCUCGGCCgGUGGGCc -3' miRNA: 3'- -AGGU--CUGGGAac-----CGGGUCGG-UAUCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 14231 | 0.67 | 0.399749 |
Target: 5'- aCCGGACCa--GGUCCGgGCCuacaucgagGGGCg -3' miRNA: 3'- aGGUCUGGgaaCCGGGU-CGGua-------UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 15097 | 0.69 | 0.290973 |
Target: 5'- cCCAGAUCCUUGGC--GGCCu--GGUu -3' miRNA: 3'- aGGUCUGGGAACCGggUCGGuauCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 15585 | 0.66 | 0.438062 |
Target: 5'- -gCAGACCgCUaacUGGCagCAGCCcgaGGGCg -3' miRNA: 3'- agGUCUGG-GA---ACCGg-GUCGGua-UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 16113 | 0.69 | 0.262516 |
Target: 5'- gCCAGACCCagcGCCCAGaacuCGUcGGCa -3' miRNA: 3'- aGGUCUGGGaacCGGGUCg---GUAuCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 16833 | 0.71 | 0.218212 |
Target: 5'- gCCaauGGGCCa--GGCCCAGuCCAUAGGg -3' miRNA: 3'- aGG---UCUGGgaaCCGGGUC-GGUAUCCg -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 17078 | 0.67 | 0.354979 |
Target: 5'- gCCAGguggcgaguACCCagGGCacccCCGGCCGUcuGGGCa -3' miRNA: 3'- aGGUC---------UGGGaaCCG----GGUCGGUA--UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 17609 | 0.68 | 0.306083 |
Target: 5'- cCCAGGCCa-UGGCCgaggGGCUggAGGCa -3' miRNA: 3'- aGGUCUGGgaACCGGg---UCGGuaUCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 17671 | 0.75 | 0.099804 |
Target: 5'- cUCCAGcCCCUcGGCCaUGGCC-UGGGCg -3' miRNA: 3'- -AGGUCuGGGAaCCGG-GUCGGuAUCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 18721 | 0.74 | 0.118534 |
Target: 5'- -gCAGAUCCUc-GCCCAGCCGcAGGCc -3' miRNA: 3'- agGUCUGGGAacCGGGUCGGUaUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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