miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30450 3' -63.4 NC_006548.1 + 21260 1.11 0.000066
Target:  5'- uGCUACCGGCAGCCUGGGCGGCCAGGCc -3'
miRNA:   3'- -CGAUGGCCGUCGGACCCGCCGGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 8702 0.76 0.039285
Target:  5'- cGCUGCgGGCgGGCCUGGaGUcccuGGCCuGGCa -3'
miRNA:   3'- -CGAUGgCCG-UCGGACC-CG----CCGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 15591 0.76 0.041603
Target:  5'- cGCUaACUGGCAGCagcccgaGGGCGGCCgacuguucgcAGGCg -3'
miRNA:   3'- -CGA-UGGCCGUCGga-----CCCGCCGG----------UCCG- -5'
30450 3' -63.4 NC_006548.1 + 23107 0.75 0.048
Target:  5'- aGCaACUGaGCAGCCUGGGUGcuauCCAGGUa -3'
miRNA:   3'- -CGaUGGC-CGUCGGACCCGCc---GGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 35263 0.75 0.050819
Target:  5'- --gACUGGCGGCgauggUGGGCGGCCuGGUa -3'
miRNA:   3'- cgaUGGCCGUCGg----ACCCGCCGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 14971 0.73 0.067504
Target:  5'- cGCUcACCGGCAGCauagGcGGUGGaCCAGGa -3'
miRNA:   3'- -CGA-UGGCCGUCGga--C-CCGCC-GGUCCg -5'
30450 3' -63.4 NC_006548.1 + 22344 0.73 0.077718
Target:  5'- --aACCGGaCAcGCgaucaccccaCUGGGCGGUCAGGCc -3'
miRNA:   3'- cgaUGGCC-GU-CG----------GACCCGCCGGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 29684 0.73 0.077718
Target:  5'- gGCUGCCGGUAGU---GGCGGCU-GGCu -3'
miRNA:   3'- -CGAUGGCCGUCGgacCCGCCGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 29721 0.72 0.079932
Target:  5'- aGCauguUCGGCuucGCCgaGGGUGGCCAGGUc -3'
miRNA:   3'- -CGau--GGCCGu--CGGa-CCCGCCGGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 25133 0.72 0.08694
Target:  5'- --gAUCGGUGGCCgGGGCGGgCUGGGUc -3'
miRNA:   3'- cgaUGGCCGUCGGaCCCGCC-GGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 32778 0.72 0.088657
Target:  5'- cGCUGCCGGUguGGCCggacauccagcugcUGGcaagcgucaccGCGGCCGGcGCa -3'
miRNA:   3'- -CGAUGGCCG--UCGG--------------ACC-----------CGCCGGUC-CG- -5'
30450 3' -63.4 NC_006548.1 + 20156 0.72 0.089403
Target:  5'- gGCgaacuCCGGCAccaCCUGGuGCGGCUcGGCa -3'
miRNA:   3'- -CGau---GGCCGUc--GGACC-CGCCGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 29168 0.71 0.097196
Target:  5'- cGCUgacgagACCGGCcugCUGGGCGGCCuGGa -3'
miRNA:   3'- -CGA------UGGCCGucgGACCCGCCGGuCCg -5'
30450 3' -63.4 NC_006548.1 + 844 0.71 0.099657
Target:  5'- gGCuUGCCGGCGGCucgcuugCUGGGCuguGGuugccagcCCAGGCg -3'
miRNA:   3'- -CG-AUGGCCGUCG-------GACCCG---CC--------GGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 26331 0.71 0.102744
Target:  5'- aGCgcguUCGGCGGCC-GGGUcgauGGCCAGaGCu -3'
miRNA:   3'- -CGau--GGCCGUCGGaCCCG----CCGGUC-CG- -5'
30450 3' -63.4 NC_006548.1 + 5619 0.7 0.111628
Target:  5'- aGCUGgucuuCCGGCAcGCCUucgGGGUGggucuucuugaGCCAGGCc -3'
miRNA:   3'- -CGAU-----GGCCGU-CGGA---CCCGC-----------CGGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 18476 0.7 0.114746
Target:  5'- aGCUGCUGGUugaguuucgcAGCCgguucGGGUGGCagcGGCg -3'
miRNA:   3'- -CGAUGGCCG----------UCGGa----CCCGCCGgu-CCG- -5'
30450 3' -63.4 NC_006548.1 + 23854 0.7 0.123574
Target:  5'- gGCaugGCCGGCgGGCUUGGGUgagagagucuccugGGCCAGcaGCa -3'
miRNA:   3'- -CGa--UGGCCG-UCGGACCCG--------------CCGGUC--CG- -5'
30450 3' -63.4 NC_006548.1 + 19082 0.7 0.124593
Target:  5'- -gUugUGGguGCCcuGGCGGCCGGGa -3'
miRNA:   3'- cgAugGCCguCGGacCCGCCGGUCCg -5'
30450 3' -63.4 NC_006548.1 + 15798 0.69 0.135219
Target:  5'- --cGCCacCGGCCUGGGUaucGGCUGGGCg -3'
miRNA:   3'- cgaUGGccGUCGGACCCG---CCGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.