miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30450 3' -63.4 NC_006548.1 + 6304 0.66 0.234969
Target:  5'- -aUGCCGGCuguguacGGCCgucgcauugaagUGGGCGcGCCacuucuucgcuuGGGCg -3'
miRNA:   3'- cgAUGGCCG-------UCGG------------ACCCGC-CGG------------UCCG- -5'
30450 3' -63.4 NC_006548.1 + 17938 0.69 0.146673
Target:  5'- aCUACgaaUGGgAGCCggaGGGUGGCCAgccuGGCg -3'
miRNA:   3'- cGAUG---GCCgUCGGa--CCCGCCGGU----CCG- -5'
30450 3' -63.4 NC_006548.1 + 22413 0.68 0.16332
Target:  5'- --cGCCGucGCGGCuuaauccucaaCUGGGCGGCCGcucuGGCc -3'
miRNA:   3'- cgaUGGC--CGUCG-----------GACCCGCCGGU----CCG- -5'
30450 3' -63.4 NC_006548.1 + 3825 0.68 0.181646
Target:  5'- aGCU-CCGcauGCAGCUUGGagaaGUGGCC-GGCg -3'
miRNA:   3'- -CGAuGGC---CGUCGGACC----CGCCGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 18106 0.67 0.191477
Target:  5'- aCUGCaccUGGCCUGGGaCGGCCuGGUg -3'
miRNA:   3'- cGAUGgccGUCGGACCC-GCCGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 27528 0.67 0.212542
Target:  5'- uGCUguucGCCGGCAucGCC-GGuuaCGGCCuGGCc -3'
miRNA:   3'- -CGA----UGGCCGU--CGGaCCc--GCCGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 8690 0.67 0.218111
Target:  5'- gGCUGCCGGCauggaaAGCCaGGaGCGccCCAacGGCg -3'
miRNA:   3'- -CGAUGGCCG------UCGGaCC-CGCc-GGU--CCG- -5'
30450 3' -63.4 NC_006548.1 + 29654 0.67 0.218111
Target:  5'- cGCUGCCaGCGguGCC-GGuGCGG-CAGGUg -3'
miRNA:   3'- -CGAUGGcCGU--CGGaCC-CGCCgGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 14227 0.66 0.223804
Target:  5'- gGCUACCGGaccagguccgGGCCUacaucgagGGGCG-CCuGGCc -3'
miRNA:   3'- -CGAUGGCCg---------UCGGA--------CCCGCcGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 7279 0.69 0.140458
Target:  5'- aGCUGCCGGUcgaggucaaccaGGCgCUGGGUgaugacggcagacacGGCCaugaucAGGCu -3'
miRNA:   3'- -CGAUGGCCG------------UCG-GACCCG---------------CCGG------UCCG- -5'
30450 3' -63.4 NC_006548.1 + 21209 0.69 0.138942
Target:  5'- gGCUGCCGGUAGCaCUGcGCuGCUgaucGGCa -3'
miRNA:   3'- -CGAUGGCCGUCG-GACcCGcCGGu---CCG- -5'
30450 3' -63.4 NC_006548.1 + 16991 0.69 0.138942
Target:  5'- aGCUGCUGGaAGCC-GGGCGcuCCGGGa -3'
miRNA:   3'- -CGAUGGCCgUCGGaCCCGCc-GGUCCg -5'
30450 3' -63.4 NC_006548.1 + 35263 0.75 0.050819
Target:  5'- --gACUGGCGGCgauggUGGGCGGCCuGGUa -3'
miRNA:   3'- cgaUGGCCGUCGg----ACCCGCCGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 29684 0.73 0.077718
Target:  5'- gGCUGCCGGUAGU---GGCGGCU-GGCu -3'
miRNA:   3'- -CGAUGGCCGUCGgacCCGCCGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 29721 0.72 0.079932
Target:  5'- aGCauguUCGGCuucGCCgaGGGUGGCCAGGUc -3'
miRNA:   3'- -CGau--GGCCGu--CGGa-CCCGCCGGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 32778 0.72 0.088657
Target:  5'- cGCUGCCGGUguGGCCggacauccagcugcUGGcaagcgucaccGCGGCCGGcGCa -3'
miRNA:   3'- -CGAUGGCCG--UCGG--------------ACC-----------CGCCGGUC-CG- -5'
30450 3' -63.4 NC_006548.1 + 844 0.71 0.099657
Target:  5'- gGCuUGCCGGCGGCucgcuugCUGGGCuguGGuugccagcCCAGGCg -3'
miRNA:   3'- -CG-AUGGCCGUCG-------GACCCG---CC--------GGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 26331 0.71 0.102744
Target:  5'- aGCgcguUCGGCGGCC-GGGUcgauGGCCAGaGCu -3'
miRNA:   3'- -CGau--GGCCGUCGGaCCCG----CCGGUC-CG- -5'
30450 3' -63.4 NC_006548.1 + 5619 0.7 0.111628
Target:  5'- aGCUGgucuuCCGGCAcGCCUucgGGGUGggucuucuugaGCCAGGCc -3'
miRNA:   3'- -CGAU-----GGCCGU-CGGA---CCCGC-----------CGGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 15798 0.69 0.135219
Target:  5'- --cGCCacCGGCCUGGGUaucGGCUGGGCg -3'
miRNA:   3'- cgaUGGccGUCGGACCCG---CCGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.