miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30450 3' -63.4 NC_006548.1 + 844 0.71 0.099657
Target:  5'- gGCuUGCCGGCGGCucgcuugCUGGGCuguGGuugccagcCCAGGCg -3'
miRNA:   3'- -CG-AUGGCCGUCG-------GACCCG---CC--------GGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 1188 0.66 0.235569
Target:  5'- cGUUGCUGGCcGCgcaGaCGGCCAGGCu -3'
miRNA:   3'- -CGAUGGCCGuCGgacCcGCCGGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 3825 0.68 0.181646
Target:  5'- aGCU-CCGcauGCAGCUUGGagaaGUGGCC-GGCg -3'
miRNA:   3'- -CGAuGGC---CGUCGGACC----CGCCGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 4652 0.68 0.167292
Target:  5'- uGCUGCCGuggaaaaGCA-CCUGGaGUuccgcuucGGCCGGGCu -3'
miRNA:   3'- -CGAUGGC-------CGUcGGACC-CG--------CCGGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 5619 0.7 0.111628
Target:  5'- aGCUGgucuuCCGGCAcGCCUucgGGGUGggucuucuugaGCCAGGCc -3'
miRNA:   3'- -CGAU-----GGCCGU-CGGA---CCCGC-----------CGGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 6304 0.66 0.234969
Target:  5'- -aUGCCGGCuguguacGGCCgucgcauugaagUGGGCGcGCCacuucuucgcuuGGGCg -3'
miRNA:   3'- cgAUGGCCG-------UCGG------------ACCCGC-CGG------------UCCG- -5'
30450 3' -63.4 NC_006548.1 + 6521 0.66 0.223804
Target:  5'- --cAUCGuGCAcgcGCCaGGGCGGCgCGGGUu -3'
miRNA:   3'- cgaUGGC-CGU---CGGaCCCGCCG-GUCCG- -5'
30450 3' -63.4 NC_006548.1 + 7279 0.69 0.140458
Target:  5'- aGCUGCCGGUcgaggucaaccaGGCgCUGGGUgaugacggcagacacGGCCaugaucAGGCu -3'
miRNA:   3'- -CGAUGGCCG------------UCG-GACCCG---------------CCGG------UCCG- -5'
30450 3' -63.4 NC_006548.1 + 7352 0.66 0.235569
Target:  5'- cGCgaACUgGGCAuCCaGGGCGGCCAuaucGGCc -3'
miRNA:   3'- -CGa-UGG-CCGUcGGaCCCGCCGGU----CCG- -5'
30450 3' -63.4 NC_006548.1 + 7468 0.66 0.223804
Target:  5'- cCUGCCuGCAgaGCUUGGucGCGaCCAGGCa -3'
miRNA:   3'- cGAUGGcCGU--CGGACC--CGCcGGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 8690 0.67 0.218111
Target:  5'- gGCUGCCGGCauggaaAGCCaGGaGCGccCCAacGGCg -3'
miRNA:   3'- -CGAUGGCCG------UCGGaCC-CGCc-GGU--CCG- -5'
30450 3' -63.4 NC_006548.1 + 8702 0.76 0.039285
Target:  5'- cGCUGCgGGCgGGCCUGGaGUcccuGGCCuGGCa -3'
miRNA:   3'- -CGAUGgCCG-UCGGACC-CG----CCGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 9852 0.66 0.247849
Target:  5'- uGCUucACCuGGuCGGCCgugaGGGCuuugguugcagcGGCCAuGGCg -3'
miRNA:   3'- -CGA--UGG-CC-GUCGGa---CCCG------------CCGGU-CCG- -5'
30450 3' -63.4 NC_006548.1 + 12202 0.68 0.158579
Target:  5'- aCUGCuCGGCGGCCcgcGGGaucucauCGGCCuuGGCc -3'
miRNA:   3'- cGAUG-GCCGUCGGa--CCC-------GCCGGu-CCG- -5'
30450 3' -63.4 NC_006548.1 + 12407 0.69 0.14276
Target:  5'- --gGCUGGUugguGCCgaGGGCGGCCggauacAGGCc -3'
miRNA:   3'- cgaUGGCCGu---CGGa-CCCGCCGG------UCCG- -5'
30450 3' -63.4 NC_006548.1 + 13391 0.66 0.227864
Target:  5'- aGC-GCCGGCGGaaucggcgcgcgcuCCUGcGGCGGgCAaaccGGCg -3'
miRNA:   3'- -CGaUGGCCGUC--------------GGAC-CCGCCgGU----CCG- -5'
30450 3' -63.4 NC_006548.1 + 13490 0.67 0.212542
Target:  5'- --aGCCccGUAGuCCUGGGCaaaGGCCAGGa -3'
miRNA:   3'- cgaUGGc-CGUC-GGACCCG---CCGGUCCg -5'
30450 3' -63.4 NC_006548.1 + 14227 0.66 0.223804
Target:  5'- gGCUACCGGaccagguccgGGCCUacaucgagGGGCG-CCuGGCc -3'
miRNA:   3'- -CGAUGGCCg---------UCGGA--------CCCGCcGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 14971 0.73 0.067504
Target:  5'- cGCUcACCGGCAGCauagGcGGUGGaCCAGGa -3'
miRNA:   3'- -CGA-UGGCCGUCGga--C-CCGCC-GGUCCg -5'
30450 3' -63.4 NC_006548.1 + 15186 0.66 0.247222
Target:  5'- gGUUGCUGGaCAuaCUGuggauacGGCGGCCAuuGGCg -3'
miRNA:   3'- -CGAUGGCC-GUcgGAC-------CCGCCGGU--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.