miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30480 5' -60.6 NC_006548.1 + 33814 1.1 0.000203
Target:  5'- uGGCCAUCGGCGACCGACCGCUCGCGAu -3'
miRNA:   3'- -CCGGUAGCCGCUGGCUGGCGAGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 15607 0.76 0.082732
Target:  5'- -cCCGagGGCGGCCGACUGUUCGCa- -3'
miRNA:   3'- ccGGUagCCGCUGGCUGGCGAGCGcu -5'
30480 5' -60.6 NC_006548.1 + 2731 0.75 0.095122
Target:  5'- aGGCCAUCGGCGagGCUGuCCaGgUCGUGAg -3'
miRNA:   3'- -CCGGUAGCCGC--UGGCuGG-CgAGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 29411 0.74 0.106278
Target:  5'- uGCCAUCGGCGA--GACCGCgcagCGCa- -3'
miRNA:   3'- cCGGUAGCCGCUggCUGGCGa---GCGcu -5'
30480 5' -60.6 NC_006548.1 + 16932 0.74 0.112308
Target:  5'- uGUCGUCauaGCGGCCGACCGC-CGUGGg -3'
miRNA:   3'- cCGGUAGc--CGCUGGCUGGCGaGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 38247 0.73 0.128455
Target:  5'- aGGgCAUCGGCaaGCUGACCGCUCugucugaGCGGg -3'
miRNA:   3'- -CCgGUAGCCGc-UGGCUGGCGAG-------CGCU- -5'
30480 5' -60.6 NC_006548.1 + 27999 0.72 0.151549
Target:  5'- gGGCCugauucCGGCGGCCGAguuuCUGC-CGCGGu -3'
miRNA:   3'- -CCGGua----GCCGCUGGCU----GGCGaGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 29786 0.72 0.15155
Target:  5'- uGGCCAcccUCGGCGaaGCCGAacaUGCUgGUGAu -3'
miRNA:   3'- -CCGGU---AGCCGC--UGGCUg--GCGAgCGCU- -5'
30480 5' -60.6 NC_006548.1 + 22842 0.72 0.155261
Target:  5'- cGGCCucGUCGGCGAuCCGcaaaggcgacuccGCCGCuUCGgGAc -3'
miRNA:   3'- -CCGG--UAGCCGCU-GGC-------------UGGCG-AGCgCU- -5'
30480 5' -60.6 NC_006548.1 + 29215 0.72 0.159908
Target:  5'- uGGCCAaggcaacUGGCGAuCCGGCCGCgaucgagCGCGu -3'
miRNA:   3'- -CCGGUa------GCCGCU-GGCUGGCGa------GCGCu -5'
30480 5' -60.6 NC_006548.1 + 32415 0.71 0.164242
Target:  5'- aGCCGUCGcCG-CCGuuGCCGUUCGCGGc -3'
miRNA:   3'- cCGGUAGCcGCuGGC--UGGCGAGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 1182 0.71 0.168681
Target:  5'- uGGCCGcgCaGaCGGCCaGGCuCGCUCGCGAa -3'
miRNA:   3'- -CCGGUa-GcC-GCUGG-CUG-GCGAGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 28982 0.71 0.175076
Target:  5'- cGCCGuacuucuucucgaucUCGGCG-CCGGCCGcCUCGaCGGu -3'
miRNA:   3'- cCGGU---------------AGCCGCuGGCUGGC-GAGC-GCU- -5'
30480 5' -60.6 NC_006548.1 + 18042 0.7 0.197627
Target:  5'- cGGUCAagGGCGAgCGACCGUUC-UGGa -3'
miRNA:   3'- -CCGGUagCCGCUgGCUGGCGAGcGCU- -5'
30480 5' -60.6 NC_006548.1 + 33934 0.7 0.2082
Target:  5'- cGuCCAUCGuCGcucACCGGCCGCgCGCGAa -3'
miRNA:   3'- cC-GGUAGCcGC---UGGCUGGCGaGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 14375 0.7 0.2082
Target:  5'- cGGCCAgaagcuggagCGGCGGCUGGCgGCaauUCGUGc -3'
miRNA:   3'- -CCGGUa---------GCCGCUGGCUGgCG---AGCGCu -5'
30480 5' -60.6 NC_006548.1 + 12202 0.69 0.224972
Target:  5'- gGGaCUGUCGGCG-CCGAUCGCUaCGUu- -3'
miRNA:   3'- -CC-GGUAGCCGCuGGCUGGCGA-GCGcu -5'
30480 5' -60.6 NC_006548.1 + 36636 0.69 0.249105
Target:  5'- cGGCCG-CGGCG-UUGAUCGCgucgaCGCGGa -3'
miRNA:   3'- -CCGGUaGCCGCuGGCUGGCGa----GCGCU- -5'
30480 5' -60.6 NC_006548.1 + 26397 0.69 0.249105
Target:  5'- uGGCCAUCGaccCGGCCG-CCGaaCGCGc -3'
miRNA:   3'- -CCGGUAGCc--GCUGGCuGGCgaGCGCu -5'
30480 5' -60.6 NC_006548.1 + 27073 0.69 0.249105
Target:  5'- gGGCCGUCuGCuGAUCGGCgGaCUCGCcGAc -3'
miRNA:   3'- -CCGGUAGcCG-CUGGCUGgC-GAGCG-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.