miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30480 5' -60.6 NC_006548.1 + 17875 0.66 0.384315
Target:  5'- aGGCCAUCcGUGACggcaUGACC-CUgGCGGa -3'
miRNA:   3'- -CCGGUAGcCGCUG----GCUGGcGAgCGCU- -5'
30480 5' -60.6 NC_006548.1 + 16408 0.67 0.311172
Target:  5'- gGGCCAgCGGCaAUUGGCCGUagucagcCGCGAg -3'
miRNA:   3'- -CCGGUaGCCGcUGGCUGGCGa------GCGCU- -5'
30480 5' -60.6 NC_006548.1 + 20809 0.67 0.318751
Target:  5'- cGCCAgaaggcucCGGUGAUCGAgCUGCUgGUGAg -3'
miRNA:   3'- cCGGUa-------GCCGCUGGCU-GGCGAgCGCU- -5'
30480 5' -60.6 NC_006548.1 + 28616 0.67 0.326468
Target:  5'- cGCCAUCaGGCGGCgaaGacaaaGCCGCUgCGCGc -3'
miRNA:   3'- cCGGUAG-CCGCUGg--C-----UGGCGA-GCGCu -5'
30480 5' -60.6 NC_006548.1 + 12519 0.67 0.342315
Target:  5'- uGGCC-UCGGCauccggcGCCGACCaGCUgGCc- -3'
miRNA:   3'- -CCGGuAGCCGc------UGGCUGG-CGAgCGcu -5'
30480 5' -60.6 NC_006548.1 + 17393 0.66 0.357046
Target:  5'- aGGCCA-CGGCG-CCGACgccuuccaccgaGUUCGcCGAg -3'
miRNA:   3'- -CCGGUaGCCGCuGGCUGg-----------CGAGC-GCU- -5'
30480 5' -60.6 NC_006548.1 + 20883 0.66 0.375647
Target:  5'- cGGCCAggucacaaagcCGGCGGCCGAggUGCUgCGCa- -3'
miRNA:   3'- -CCGGUa----------GCCGCUGGCUg-GCGA-GCGcu -5'
30480 5' -60.6 NC_006548.1 + 28533 0.66 0.375647
Target:  5'- aGuCCugcUCGGCG-CCGGCCaGgUCGCGGc -3'
miRNA:   3'- cC-GGu--AGCCGCuGGCUGG-CgAGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 36425 0.66 0.375647
Target:  5'- cGGaCGUcCGGCGACUucuGcCCGgUCGCGAc -3'
miRNA:   3'- -CCgGUA-GCCGCUGG---CuGGCgAGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 35194 0.67 0.311172
Target:  5'- aGGCCGagGGCGGCaucguugGGCCGCUgGaCGu -3'
miRNA:   3'- -CCGGUagCCGCUGg------CUGGCGAgC-GCu -5'
30480 5' -60.6 NC_006548.1 + 12251 0.68 0.296426
Target:  5'- aGCCGcUGGCGuGCUGAugcCCGCUCGCc- -3'
miRNA:   3'- cCGGUaGCCGC-UGGCU---GGCGAGCGcu -5'
30480 5' -60.6 NC_006548.1 + 21143 0.68 0.28926
Target:  5'- uGCCAgCGGCGccaucGCCGcCCGCcguaUCGUGAu -3'
miRNA:   3'- cCGGUaGCCGC-----UGGCuGGCG----AGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 38247 0.73 0.128455
Target:  5'- aGGgCAUCGGCaaGCUGACCGCUCugucugaGCGGg -3'
miRNA:   3'- -CCgGUAGCCGc-UGGCUGGCGAG-------CGCU- -5'
30480 5' -60.6 NC_006548.1 + 27999 0.72 0.151549
Target:  5'- gGGCCugauucCGGCGGCCGAguuuCUGC-CGCGGu -3'
miRNA:   3'- -CCGGua----GCCGCUGGCU----GGCGaGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 29215 0.72 0.159908
Target:  5'- uGGCCAaggcaacUGGCGAuCCGGCCGCgaucgagCGCGu -3'
miRNA:   3'- -CCGGUa------GCCGCU-GGCUGGCGa------GCGCu -5'
30480 5' -60.6 NC_006548.1 + 32415 0.71 0.164242
Target:  5'- aGCCGUCGcCG-CCGuuGCCGUUCGCGGc -3'
miRNA:   3'- cCGGUAGCcGCuGGC--UGGCGAGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 18042 0.7 0.197627
Target:  5'- cGGUCAagGGCGAgCGACCGUUC-UGGa -3'
miRNA:   3'- -CCGGUagCCGCUgGCUGGCGAGcGCU- -5'
30480 5' -60.6 NC_006548.1 + 14375 0.7 0.2082
Target:  5'- cGGCCAgaagcuggagCGGCGGCUGGCgGCaauUCGUGc -3'
miRNA:   3'- -CCGGUa---------GCCGCUGGCUGgCG---AGCGCu -5'
30480 5' -60.6 NC_006548.1 + 12202 0.69 0.224972
Target:  5'- gGGaCUGUCGGCG-CCGAUCGCUaCGUu- -3'
miRNA:   3'- -CC-GGUAGCCGCuGGCUGGCGA-GCGcu -5'
30480 5' -60.6 NC_006548.1 + 36257 0.68 0.275336
Target:  5'- aGGCuCAUCgaGGCG-CCGuACCGUgaucUCGCGGc -3'
miRNA:   3'- -CCG-GUAG--CCGCuGGC-UGGCG----AGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.