miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30480 5' -60.6 NC_006548.1 + 1182 0.71 0.168681
Target:  5'- uGGCCGcgCaGaCGGCCaGGCuCGCUCGCGAa -3'
miRNA:   3'- -CCGGUa-GcC-GCUGG-CUG-GCGAGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 2731 0.75 0.095122
Target:  5'- aGGCCAUCGGCGagGCUGuCCaGgUCGUGAg -3'
miRNA:   3'- -CCGGUAGCCGC--UGGCuGG-CgAGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 4509 0.66 0.375647
Target:  5'- uGCCAUCGGCaACaugauGAUCGCg-GCGAu -3'
miRNA:   3'- cCGGUAGCCGcUGg----CUGGCGagCGCU- -5'
30480 5' -60.6 NC_006548.1 + 8188 0.68 0.268577
Target:  5'- uGGCgCAguUCGGCGACggccucccuuaCGACCGCaucCGCGu -3'
miRNA:   3'- -CCG-GU--AGCCGCUG-----------GCUGGCGa--GCGCu -5'
30480 5' -60.6 NC_006548.1 + 11894 0.66 0.393115
Target:  5'- aGGUCGUaGGUgccuGGCUGcGCCGCUCGCuGAu -3'
miRNA:   3'- -CCGGUAgCCG----CUGGC-UGGCGAGCG-CU- -5'
30480 5' -60.6 NC_006548.1 + 12202 0.69 0.224972
Target:  5'- gGGaCUGUCGGCG-CCGAUCGCUaCGUu- -3'
miRNA:   3'- -CC-GGUAGCCGCuGGCUGGCGA-GCGcu -5'
30480 5' -60.6 NC_006548.1 + 12251 0.68 0.296426
Target:  5'- aGCCGcUGGCGuGCUGAugcCCGCUCGCc- -3'
miRNA:   3'- cCGGUaGCCGC-UGGCU---GGCGAGCGcu -5'
30480 5' -60.6 NC_006548.1 + 12519 0.67 0.342315
Target:  5'- uGGCC-UCGGCauccggcGCCGACCaGCUgGCc- -3'
miRNA:   3'- -CCGGuAGCCGc------UGGCUGG-CGAgCGcu -5'
30480 5' -60.6 NC_006548.1 + 12588 0.66 0.353735
Target:  5'- aGGCCAgcuggUCGGCG-CCGgauGCCGaggccagcuuacggUCGCGAu -3'
miRNA:   3'- -CCGGU-----AGCCGCuGGC---UGGCg-------------AGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 12640 0.67 0.326469
Target:  5'- cGGaaGUUGGCGGCCGAgCGCcCgGCGu -3'
miRNA:   3'- -CCggUAGCCGCUGGCUgGCGaG-CGCu -5'
30480 5' -60.6 NC_006548.1 + 12892 0.67 0.342316
Target:  5'- aGCCAcacCGGacuuACCGcGCCGCUCGCGc -3'
miRNA:   3'- cCGGUa--GCCgc--UGGC-UGGCGAGCGCu -5'
30480 5' -60.6 NC_006548.1 + 14375 0.7 0.2082
Target:  5'- cGGCCAgaagcuggagCGGCGGCUGGCgGCaauUCGUGc -3'
miRNA:   3'- -CCGGUa---------GCCGCUGGCUGgCG---AGCGCu -5'
30480 5' -60.6 NC_006548.1 + 15607 0.76 0.082732
Target:  5'- -cCCGagGGCGGCCGACUGUUCGCa- -3'
miRNA:   3'- ccGGUagCCGCUGGCUGGCGAGCGcu -5'
30480 5' -60.6 NC_006548.1 + 16408 0.67 0.311172
Target:  5'- gGGCCAgCGGCaAUUGGCCGUagucagcCGCGAg -3'
miRNA:   3'- -CCGGUaGCCGcUGGCUGGCGa------GCGCU- -5'
30480 5' -60.6 NC_006548.1 + 16866 0.66 0.393115
Target:  5'- uGCCcaCGGCGGUCGGCCGCUaUGaCGAc -3'
miRNA:   3'- cCGGuaGCCGCUGGCUGGCGA-GC-GCU- -5'
30480 5' -60.6 NC_006548.1 + 16932 0.74 0.112308
Target:  5'- uGUCGUCauaGCGGCCGACCGC-CGUGGg -3'
miRNA:   3'- cCGGUAGc--CGCUGGCUGGCGaGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 17393 0.66 0.357046
Target:  5'- aGGCCA-CGGCG-CCGACgccuuccaccgaGUUCGcCGAg -3'
miRNA:   3'- -CCGGUaGCCGCuGGCUGg-----------CGAGC-GCU- -5'
30480 5' -60.6 NC_006548.1 + 17875 0.66 0.384315
Target:  5'- aGGCCAUCcGUGACggcaUGACC-CUgGCGGa -3'
miRNA:   3'- -CCGGUAGcCGCUG----GCUGGcGAgCGCU- -5'
30480 5' -60.6 NC_006548.1 + 18042 0.7 0.197627
Target:  5'- cGGUCAagGGCGAgCGACCGUUC-UGGa -3'
miRNA:   3'- -CCGGUagCCGCUgGCUGGCGAGcGCU- -5'
30480 5' -60.6 NC_006548.1 + 18655 0.66 0.393115
Target:  5'- aGCCAU-GGCGACa-ACCGC-CGCa- -3'
miRNA:   3'- cCGGUAgCCGCUGgcUGGCGaGCGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.