miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30492 5' -57.2 NC_006548.1 + 13737 0.66 0.526891
Target:  5'- --gCCUGCUCGAUG-GCGuccaGCCGgUa -3'
miRNA:   3'- agaGGACGAGCUGCaCGUug--CGGCgG- -5'
30492 5' -57.2 NC_006548.1 + 16303 0.66 0.534394
Target:  5'- cUCUggCCUGCaggugcccaacgauUCGAUccUGCAGCGCCGUg -3'
miRNA:   3'- -AGA--GGACG--------------AGCUGc-ACGUUGCGGCGg -5'
30492 5' -57.2 NC_006548.1 + 13561 0.66 0.516243
Target:  5'- cUCggugCCUGCgcgggCGGCG-GCAA-GCUGCUg -3'
miRNA:   3'- -AGa---GGACGa----GCUGCaCGUUgCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 15673 0.66 0.495215
Target:  5'- aUCUUggagCUGCUCGGCGaugUGCucuauACG-CGCCa -3'
miRNA:   3'- -AGAG----GACGAGCUGC---ACGu----UGCgGCGG- -5'
30492 5' -57.2 NC_006548.1 + 33694 0.66 0.483816
Target:  5'- -gUCCUGCcggcaaagUGucaugaaugagauGCGUGCGACGUCGCUc -3'
miRNA:   3'- agAGGACGa-------GC-------------UGCACGUUGCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 28157 0.66 0.516243
Target:  5'- -gUUCUGCaggcgguugaguUCGGCcUGCAG-GCCGCCa -3'
miRNA:   3'- agAGGACG------------AGCUGcACGUUgCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 21654 0.66 0.516243
Target:  5'- aCUCCUGCUUGcCGacagGUAcGCGCgGCa -3'
miRNA:   3'- aGAGGACGAGCuGCa---CGU-UGCGgCGg -5'
30492 5' -57.2 NC_006548.1 + 29429 0.66 0.509895
Target:  5'- cCUCCUGCagcgacagggugccaUCGGCGagaccgcGCAGCGCauccugcaUGCCa -3'
miRNA:   3'- aGAGGACG---------------AGCUGCa------CGUUGCG--------GCGG- -5'
30492 5' -57.2 NC_006548.1 + 29227 0.66 0.505682
Target:  5'- cUCUaCCUGgUCGGCGguagaccgaUGCAGgucuagcaguUGCUGCCg -3'
miRNA:   3'- -AGA-GGACgAGCUGC---------ACGUU----------GCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 22600 0.66 0.484847
Target:  5'- cUCUCCUccGC-CGGCG-GCuguGCGCCGgUa -3'
miRNA:   3'- -AGAGGA--CGaGCUGCaCGu--UGCGGCgG- -5'
30492 5' -57.2 NC_006548.1 + 22674 0.66 0.516243
Target:  5'- cUUCCggcaGUUCGGCGaGCGgaacgauaGCGCCGUCc -3'
miRNA:   3'- aGAGGa---CGAGCUGCaCGU--------UGCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 35962 0.66 0.526891
Target:  5'- aCUCCU--UCGuCGUcGUuaucACGCCGCCg -3'
miRNA:   3'- aGAGGAcgAGCuGCA-CGu---UGCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 20491 0.66 0.536545
Target:  5'- uUCUCCgaacccGCaauagaaggcgUCGACGccGCAGCagccucuGCCGCCg -3'
miRNA:   3'- -AGAGGa-----CG-----------AGCUGCa-CGUUG-------CGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 16990 0.67 0.464431
Target:  5'- --gUCUGUaUGGCaUGCAGgGCCGCCa -3'
miRNA:   3'- agaGGACGaGCUGcACGUUgCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 9562 0.67 0.433702
Target:  5'- cCUCCUGCUgGugGaccgaaccguUGCAucaccagGCGCCgaacGCCu -3'
miRNA:   3'- aGAGGACGAgCugC----------ACGU-------UGCGG----CGG- -5'
30492 5' -57.2 NC_006548.1 + 4135 0.67 0.464431
Target:  5'- gUCagCCUGCUCGGCGU-CGAUGUgGgCu -3'
miRNA:   3'- -AGa-GGACGAGCUGCAcGUUGCGgCgG- -5'
30492 5' -57.2 NC_006548.1 + 2724 0.67 0.474584
Target:  5'- --aUCUGCaggCGGCGcaggGCAagcACGCUGCCg -3'
miRNA:   3'- agaGGACGa--GCUGCa---CGU---UGCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 33296 0.67 0.454392
Target:  5'- cCUCCgGCcgCGAgGagcaUGCGGCGCUGCg -3'
miRNA:   3'- aGAGGaCGa-GCUgC----ACGUUGCGGCGg -5'
30492 5' -57.2 NC_006548.1 + 29260 0.67 0.444472
Target:  5'- aUCUCCgccagcaGCUCGACaauacccgGCug-GCCGCCg -3'
miRNA:   3'- -AGAGGa------CGAGCUGca------CGuugCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 22158 0.67 0.464431
Target:  5'- gCUCCUGCaggaaggccaUCGGCaccaUGCccuCGUCGCCg -3'
miRNA:   3'- aGAGGACG----------AGCUGc---ACGuu-GCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.