miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30492 5' -57.2 NC_006548.1 + 658 1.13 0.000229
Target:  5'- uUCUCCUGCUCGACGUGCAACGCCGCCa -3'
miRNA:   3'- -AGAGGACGAGCUGCACGUUGCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 31510 0.75 0.139835
Target:  5'- --aCCUGCcgcgaucUCGACGUGCAggugcagauAgGCCGCCg -3'
miRNA:   3'- agaGGACG-------AGCUGCACGU---------UgCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 21988 0.75 0.140226
Target:  5'- -aUCCUGCgcccgaacaUCGGCGUGCuGgGCCGUCg -3'
miRNA:   3'- agAGGACG---------AGCUGCACGuUgCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 23694 0.74 0.152453
Target:  5'- gCUCaaGCaCGugG-GCGGCGCCGCCg -3'
miRNA:   3'- aGAGgaCGaGCugCaCGUUGCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 2328 0.74 0.161134
Target:  5'- gUUCCUGUUCGuCGgcugcGCGGCGgCGCCg -3'
miRNA:   3'- aGAGGACGAGCuGCa----CGUUGCgGCGG- -5'
30492 5' -57.2 NC_006548.1 + 14728 0.72 0.22907
Target:  5'- cCUUCUGCUCaGCGaGCAGCGCCugGCg -3'
miRNA:   3'- aGAGGACGAGcUGCaCGUUGCGG--CGg -5'
30492 5' -57.2 NC_006548.1 + 18962 0.72 0.235193
Target:  5'- uUUUCCUGcCUUGACGUccuugGCcACGuCCGCCc -3'
miRNA:   3'- -AGAGGAC-GAGCUGCA-----CGuUGC-GGCGG- -5'
30492 5' -57.2 NC_006548.1 + 28534 0.72 0.241453
Target:  5'- -gUCCUGCUCGGCGccgGCcAgGUCGCg -3'
miRNA:   3'- agAGGACGAGCUGCa--CGuUgCGGCGg -5'
30492 5' -57.2 NC_006548.1 + 27321 0.71 0.247852
Target:  5'- -aUCCUGCUUGGCuGUuucaGCAGCagccuuggcuGCCGCCu -3'
miRNA:   3'- agAGGACGAGCUG-CA----CGUUG----------CGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 36566 0.69 0.327674
Target:  5'- aUCUUCcGCgUCGACGcgauCAACGCCGCg -3'
miRNA:   3'- -AGAGGaCG-AGCUGCac--GUUGCGGCGg -5'
30492 5' -57.2 NC_006548.1 + 35709 0.69 0.327674
Target:  5'- -aUCCgugacGaCUaCGACGUcGCGACGCUGCCc -3'
miRNA:   3'- agAGGa----C-GA-GCUGCA-CGUUGCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 27394 0.69 0.335806
Target:  5'- gCUCCUGCUCGGCcagGCGagcgagagaGCGCUgaGUCg -3'
miRNA:   3'- aGAGGACGAGCUGca-CGU---------UGCGG--CGG- -5'
30492 5' -57.2 NC_006548.1 + 27877 0.69 0.352508
Target:  5'- gUUUCCUGgCgggUGAgGUGCAGCGCaguggugGCCg -3'
miRNA:   3'- -AGAGGAC-Ga--GCUgCACGUUGCGg------CGG- -5'
30492 5' -57.2 NC_006548.1 + 32490 0.69 0.352508
Target:  5'- gCUCCUGCagCGccgcgaacggcaACGgcgGCGACGgCUGCCg -3'
miRNA:   3'- aGAGGACGa-GC------------UGCa--CGUUGC-GGCGG- -5'
30492 5' -57.2 NC_006548.1 + 10225 0.69 0.368912
Target:  5'- gCUCUUGCUgGAgGUcuaccgcGCGAUgaguGCCGCCa -3'
miRNA:   3'- aGAGGACGAgCUgCA-------CGUUG----CGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 30671 0.68 0.39678
Target:  5'- gCUCCUaccGUggCGACGuUGCAAC-CCGCUg -3'
miRNA:   3'- aGAGGA---CGa-GCUGC-ACGUUGcGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 3442 0.68 0.415463
Target:  5'- --cCCUGUgCGAgGaGCAGCGCCGUg -3'
miRNA:   3'- agaGGACGaGCUgCaCGUUGCGGCGg -5'
30492 5' -57.2 NC_006548.1 + 9562 0.67 0.433702
Target:  5'- cCUCCUGCUgGugGaccgaaccguUGCAucaccagGCGCCgaacGCCu -3'
miRNA:   3'- aGAGGACGAgCugC----------ACGU-------UGCGG----CGG- -5'
30492 5' -57.2 NC_006548.1 + 29260 0.67 0.444472
Target:  5'- aUCUCCgccagcaGCUCGACaauacccgGCug-GCCGCCg -3'
miRNA:   3'- -AGAGGa------CGAGCUGca------CGuugCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 33296 0.67 0.454392
Target:  5'- cCUCCgGCcgCGAgGagcaUGCGGCGCUGCg -3'
miRNA:   3'- aGAGGaCGa-GCUgC----ACGUUGCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.