miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30492 5' -57.2 NC_006548.1 + 658 1.13 0.000229
Target:  5'- uUCUCCUGCUCGACGUGCAACGCCGCCa -3'
miRNA:   3'- -AGAGGACGAGCUGCACGUUGCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 2328 0.74 0.161134
Target:  5'- gUUCCUGUUCGuCGgcugcGCGGCGgCGCCg -3'
miRNA:   3'- aGAGGACGAGCuGCa----CGUUGCgGCGG- -5'
30492 5' -57.2 NC_006548.1 + 2724 0.67 0.474584
Target:  5'- --aUCUGCaggCGGCGcaggGCAagcACGCUGCCg -3'
miRNA:   3'- agaGGACGa--GCUGCa---CGU---UGCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 3442 0.68 0.415463
Target:  5'- --cCCUGUgCGAgGaGCAGCGCCGUg -3'
miRNA:   3'- agaGGACGaGCUgCaCGUUGCGGCGg -5'
30492 5' -57.2 NC_006548.1 + 4135 0.67 0.464431
Target:  5'- gUCagCCUGCUCGGCGU-CGAUGUgGgCu -3'
miRNA:   3'- -AGa-GGACGAGCUGCAcGUUGCGgCgG- -5'
30492 5' -57.2 NC_006548.1 + 9562 0.67 0.433702
Target:  5'- cCUCCUGCUgGugGaccgaaccguUGCAucaccagGCGCCgaacGCCu -3'
miRNA:   3'- aGAGGACGAgCugC----------ACGU-------UGCGG----CGG- -5'
30492 5' -57.2 NC_006548.1 + 10225 0.69 0.368912
Target:  5'- gCUCUUGCUgGAgGUcuaccgcGCGAUgaguGCCGCCa -3'
miRNA:   3'- aGAGGACGAgCUgCA-------CGUUG----CGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 11751 0.67 0.464431
Target:  5'- -gUCaUGCgCGGCGcGCGGCGgCGCCg -3'
miRNA:   3'- agAGgACGaGCUGCaCGUUGCgGCGG- -5'
30492 5' -57.2 NC_006548.1 + 13369 0.67 0.474584
Target:  5'- gCUCCUGC--GGCGgGCAAacCGgCGCCg -3'
miRNA:   3'- aGAGGACGagCUGCaCGUU--GCgGCGG- -5'
30492 5' -57.2 NC_006548.1 + 13561 0.66 0.516243
Target:  5'- cUCggugCCUGCgcgggCGGCG-GCAA-GCUGCUg -3'
miRNA:   3'- -AGa---GGACGa----GCUGCaCGUUgCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 13737 0.66 0.526891
Target:  5'- --gCCUGCUCGAUG-GCGuccaGCCGgUa -3'
miRNA:   3'- agaGGACGAGCUGCaCGUug--CGGCgG- -5'
30492 5' -57.2 NC_006548.1 + 14728 0.72 0.22907
Target:  5'- cCUUCUGCUCaGCGaGCAGCGCCugGCg -3'
miRNA:   3'- aGAGGACGAGcUGCaCGUUGCGG--CGg -5'
30492 5' -57.2 NC_006548.1 + 15673 0.66 0.495215
Target:  5'- aUCUUggagCUGCUCGGCGaugUGCucuauACG-CGCCa -3'
miRNA:   3'- -AGAG----GACGAGCUGC---ACGu----UGCgGCGG- -5'
30492 5' -57.2 NC_006548.1 + 16303 0.66 0.534394
Target:  5'- cUCUggCCUGCaggugcccaacgauUCGAUccUGCAGCGCCGUg -3'
miRNA:   3'- -AGA--GGACG--------------AGCUGc-ACGUUGCGGCGg -5'
30492 5' -57.2 NC_006548.1 + 16545 0.67 0.464431
Target:  5'- gCUgCUGCUCcAgGUGCucUGCCGCa -3'
miRNA:   3'- aGAgGACGAGcUgCACGuuGCGGCGg -5'
30492 5' -57.2 NC_006548.1 + 16990 0.67 0.464431
Target:  5'- --gUCUGUaUGGCaUGCAGgGCCGCCa -3'
miRNA:   3'- agaGGACGaGCUGcACGUUgCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 18962 0.72 0.235193
Target:  5'- uUUUCCUGcCUUGACGUccuugGCcACGuCCGCCc -3'
miRNA:   3'- -AGAGGAC-GAGCUGCA-----CGuUGC-GGCGG- -5'
30492 5' -57.2 NC_006548.1 + 20491 0.66 0.536545
Target:  5'- uUCUCCgaacccGCaauagaaggcgUCGACGccGCAGCagccucuGCCGCCg -3'
miRNA:   3'- -AGAGGa-----CG-----------AGCUGCa-CGUUG-------CGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 21654 0.66 0.516243
Target:  5'- aCUCCUGCUUGcCGacagGUAcGCGCgGCa -3'
miRNA:   3'- aGAGGACGAGCuGCa---CGU-UGCGgCGg -5'
30492 5' -57.2 NC_006548.1 + 21988 0.75 0.140226
Target:  5'- -aUCCUGCgcccgaacaUCGGCGUGCuGgGCCGUCg -3'
miRNA:   3'- agAGGACG---------AGCUGCACGuUgCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.