miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30495 5' -65.6 NC_006548.1 + 1914 0.67 0.170638
Target:  5'- aCGGC-CUGGUGCCcgauccccuggugcaGCCGCGCGcGCUu -3'
miRNA:   3'- aGUCGaGGCCGCGG---------------CGGCGCGU-CGGc -5'
30495 5' -65.6 NC_006548.1 + 2252 1.08 0.000072
Target:  5'- gUCAGCUCCGGCGCCGCCGCGCAGCCGa -3'
miRNA:   3'- -AGUCGAGGCCGCGGCGGCGCGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 2318 0.66 0.173337
Target:  5'- gUCGGCUgCgCGGCGgCGCCGgaGCuGaCCGg -3'
miRNA:   3'- -AGUCGA-G-GCCGCgGCGGCg-CGuC-GGC- -5'
30495 5' -65.6 NC_006548.1 + 4289 0.72 0.065314
Target:  5'- cCAGCUCCGGCGUCaGCacgGUGCAGagCGg -3'
miRNA:   3'- aGUCGAGGCCGCGG-CGg--CGCGUCg-GC- -5'
30495 5' -65.6 NC_006548.1 + 6888 0.72 0.066969
Target:  5'- cCGGCUCCGGCGCCaauaGCUGggauggaUGCAGgCGg -3'
miRNA:   3'- aGUCGAGGCCGCGG----CGGC-------GCGUCgGC- -5'
30495 5' -65.6 NC_006548.1 + 6947 0.73 0.049948
Target:  5'- cCAGCUaUUGGCGCCGgagccggucaccgaaCUGCGCAGCCu -3'
miRNA:   3'- aGUCGA-GGCCGCGGC---------------GGCGCGUCGGc -5'
30495 5' -65.6 NC_006548.1 + 7125 0.67 0.160217
Target:  5'- gCGGCUCUGccccgaguccuuGCGCCGCuuaCGCGguGCgCGc -3'
miRNA:   3'- aGUCGAGGC------------CGCGGCG---GCGCguCG-GC- -5'
30495 5' -65.6 NC_006548.1 + 7298 0.66 0.173337
Target:  5'- gCAGCgcaCGGCGCUauGCaaaGCAGCCGc -3'
miRNA:   3'- aGUCGag-GCCGCGG--CGgcgCGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 7609 0.66 0.202473
Target:  5'- gCAGCUCUGcCGCgCGCUG-GuCGGCCGu -3'
miRNA:   3'- aGUCGAGGCcGCG-GCGGCgC-GUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 9038 0.67 0.170638
Target:  5'- cCAGUUCCGGCGCUucauugGaCgGCGCuccagaagccccucuGGCCGu -3'
miRNA:   3'- aGUCGAGGCCGCGG------C-GgCGCG---------------UCGGC- -5'
30495 5' -65.6 NC_006548.1 + 11681 0.8 0.015891
Target:  5'- --cGCaaccCCGGCGCCGCCGCGC-GCCGc -3'
miRNA:   3'- aguCGa---GGCCGCGGCGGCGCGuCGGC- -5'
30495 5' -65.6 NC_006548.1 + 12409 0.68 0.129511
Target:  5'- aCGGCUggUUGGUGCCGa-GgGCGGCCGg -3'
miRNA:   3'- aGUCGA--GGCCGCGGCggCgCGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 12523 0.71 0.07099
Target:  5'- cUCGGCaUCCGGCGCCGaCCaGC-UGGCCu -3'
miRNA:   3'- -AGUCG-AGGCCGCGGC-GG-CGcGUCGGc -5'
30495 5' -65.6 NC_006548.1 + 12585 0.66 0.192316
Target:  5'- cCAGCUggUCGGCGCCggauGCCGa--GGCCa -3'
miRNA:   3'- aGUCGA--GGCCGCGG----CGGCgcgUCGGc -5'
30495 5' -65.6 NC_006548.1 + 12845 0.66 0.202473
Target:  5'- aCAGCUCaGGUGCCgguaggaaGUCGCGacugccugcgaaCAGCCGc -3'
miRNA:   3'- aGUCGAGgCCGCGG--------CGGCGC------------GUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 12885 0.67 0.160217
Target:  5'- cCGGaCUUaccGCGCCGCuCGCGCGGCa- -3'
miRNA:   3'- aGUC-GAGgc-CGCGGCG-GCGCGUCGgc -5'
30495 5' -65.6 NC_006548.1 + 12932 0.7 0.086134
Target:  5'- -uGGCUCgcgcugagcgCGGUGCUguGCgGCGCAGCCGu -3'
miRNA:   3'- agUCGAG----------GCCGCGG--CGgCGCGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 13303 0.71 0.07099
Target:  5'- cUCGGCgCCGGUuugcccGCCGCaggaGCGCGcGCCGa -3'
miRNA:   3'- -AGUCGaGGCCG------CGGCGg---CGCGU-CGGC- -5'
30495 5' -65.6 NC_006548.1 + 13363 0.68 0.130908
Target:  5'- gCGGCgggcaaaCCGGCGCCgagggcgguguugaaGUCGCGCacccAGCCGc -3'
miRNA:   3'- aGUCGa------GGCCGCGG---------------CGGCGCG----UCGGC- -5'
30495 5' -65.6 NC_006548.1 + 13628 0.66 0.197337
Target:  5'- gCAGCUUgc-CGCCGcCCGCGCAGgCa -3'
miRNA:   3'- aGUCGAGgccGCGGC-GGCGCGUCgGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.