miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30495 5' -65.6 NC_006548.1 + 32960 0.68 0.126079
Target:  5'- -uGGCgcgcCCGGUGCaGCgGCGCuGGCCGg -3'
miRNA:   3'- agUCGa---GGCCGCGgCGgCGCG-UCGGC- -5'
30495 5' -65.6 NC_006548.1 + 31313 0.71 0.081518
Target:  5'- aCAGC-CUGGCGUgGaaCGCGCAGCCc -3'
miRNA:   3'- aGUCGaGGCCGCGgCg-GCGCGUCGGc -5'
30495 5' -65.6 NC_006548.1 + 36805 0.71 0.081518
Target:  5'- cCAGCgCCaGGCGCgGCCuuauGCGCcuGGCCGg -3'
miRNA:   3'- aGUCGaGG-CCGCGgCGG----CGCG--UCGGC- -5'
30495 5' -65.6 NC_006548.1 + 12932 0.7 0.086134
Target:  5'- -uGGCUCgcgcugagcgCGGUGCUguGCgGCGCAGCCGu -3'
miRNA:   3'- agUCGAG----------GCCGCGG--CGgCGCGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 16186 0.7 0.088534
Target:  5'- aCGGCUUCGGCGCgG-UGCGCGGUa- -3'
miRNA:   3'- aGUCGAGGCCGCGgCgGCGCGUCGgc -5'
30495 5' -65.6 NC_006548.1 + 17449 0.7 0.088534
Target:  5'- cCAGCagCGGCGauggCGCCGCaGCuGGCCGa -3'
miRNA:   3'- aGUCGagGCCGCg---GCGGCG-CG-UCGGC- -5'
30495 5' -65.6 NC_006548.1 + 29415 0.7 0.090998
Target:  5'- gUCAGCcgaucgCUGGCcgacGuuGCCGCGCAGCa- -3'
miRNA:   3'- -AGUCGa-----GGCCG----CggCGGCGCGUCGgc -5'
30495 5' -65.6 NC_006548.1 + 32767 0.69 0.107199
Target:  5'- gCGGaUCUgGGCGCUGCCgGUGUGGCCGg -3'
miRNA:   3'- aGUCgAGG-CCGCGGCGG-CGCGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 37728 0.69 0.119466
Target:  5'- cCGGCgaCCGGCGUcuacuCGCUguucuGCGCAGCUGa -3'
miRNA:   3'- aGUCGa-GGCCGCG-----GCGG-----CGCGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 32399 0.71 0.077138
Target:  5'- aUCAGCcuggCCGGCcaGCCGUCGCcGCcguuGCCGu -3'
miRNA:   3'- -AGUCGa---GGCCG--CGGCGGCG-CGu---CGGC- -5'
30495 5' -65.6 NC_006548.1 + 14329 0.71 0.075034
Target:  5'- -aGGCcgaagCCGGCgagcuGCCcaGCCGUGCAGCCGu -3'
miRNA:   3'- agUCGa----GGCCG-----CGG--CGGCGCGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 29659 0.71 0.07099
Target:  5'- cCAGCggugCCGGUGCgGCagGUGCGGCUGc -3'
miRNA:   3'- aGUCGa---GGCCGCGgCGg-CGCGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 11681 0.8 0.015891
Target:  5'- --cGCaaccCCGGCGCCGCCGCGC-GCCGc -3'
miRNA:   3'- aguCGa---GGCCGCGGCGGCGCGuCGGC- -5'
30495 5' -65.6 NC_006548.1 + 20218 0.72 0.061776
Target:  5'- aUCGGCUuccUCGGUGCCguGCCGC-CGGCCa -3'
miRNA:   3'- -AGUCGA---GGCCGCGG--CGGCGcGUCGGc -5'
30495 5' -65.6 NC_006548.1 + 35871 0.72 0.063521
Target:  5'- -aAGaaugCCGGCGCgauCCGCGCGGCCGg -3'
miRNA:   3'- agUCga--GGCCGCGgc-GGCGCGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 4289 0.72 0.065314
Target:  5'- cCAGCUCCGGCGUCaGCacgGUGCAGagCGg -3'
miRNA:   3'- aGUCGAGGCCGCGG-CGg--CGCGUCg-GC- -5'
30495 5' -65.6 NC_006548.1 + 6888 0.72 0.066969
Target:  5'- cCGGCUCCGGCGCCaauaGCUGggauggaUGCAGgCGg -3'
miRNA:   3'- aGUCGAGGCCGCGG----CGGC-------GCGUCgGC- -5'
30495 5' -65.6 NC_006548.1 + 33291 0.72 0.068856
Target:  5'- gCAGacCUCCGGcCGCgaggagcaugcggCGCUGCGCAGCCu -3'
miRNA:   3'- aGUC--GAGGCC-GCG-------------GCGGCGCGUCGGc -5'
30495 5' -65.6 NC_006548.1 + 12523 0.71 0.07099
Target:  5'- cUCGGCaUCCGGCGCCGaCCaGC-UGGCCu -3'
miRNA:   3'- -AGUCG-AGGCCGCGGC-GG-CGcGUCGGc -5'
30495 5' -65.6 NC_006548.1 + 13303 0.71 0.07099
Target:  5'- cUCGGCgCCGGUuugcccGCCGCaggaGCGCGcGCCGa -3'
miRNA:   3'- -AGUCGaGGCCG------CGGCGg---CGCGU-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.