Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30495 | 5' | -65.6 | NC_006548.1 | + | 7125 | 0.67 | 0.160217 |
Target: 5'- gCGGCUCUGccccgaguccuuGCGCCGCuuaCGCGguGCgCGc -3' miRNA: 3'- aGUCGAGGC------------CGCGGCG---GCGCguCG-GC- -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 32636 | 0.67 | 0.151974 |
Target: 5'- aUCAGCccagUCCGGCGCaaacgGCCaCGCGGUg- -3' miRNA: 3'- -AGUCG----AGGCCGCGg----CGGcGCGUCGgc -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 18243 | 0.67 | 0.151974 |
Target: 5'- aCGGC-CCGGacgaGCCuCCGaGCAGCCa -3' miRNA: 3'- aGUCGaGGCCg---CGGcGGCgCGUCGGc -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 23389 | 0.67 | 0.143736 |
Target: 5'- gUAGCcCCGGCGCUggaggaaGCCGUcgauGUAGCCu -3' miRNA: 3'- aGUCGaGGCCGCGG-------CGGCG----CGUCGGc -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 27211 | 0.68 | 0.136635 |
Target: 5'- cCAGCaggCGGCGaCCGagcaaCGCGCuGCCGa -3' miRNA: 3'- aGUCGag-GCCGC-GGCg----GCGCGuCGGC- -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 20858 | 0.68 | 0.136635 |
Target: 5'- -gAGCcuUCUGGCGCgGCaGCagGCGGCCGg -3' miRNA: 3'- agUCG--AGGCCGCGgCGgCG--CGUCGGC- -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 13363 | 0.68 | 0.130908 |
Target: 5'- gCGGCgggcaaaCCGGCGCCgagggcgguguugaaGUCGCGCacccAGCCGc -3' miRNA: 3'- aGUCGa------GGCCGCGG---------------CGGCGCG----UCGGC- -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 20527 | 0.68 | 0.129511 |
Target: 5'- gCAGcCUCUGcCGCCGCUGCGgaagAGCCGc -3' miRNA: 3'- aGUC-GAGGCcGCGGCGGCGCg---UCGGC- -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 27804 | 0.68 | 0.129511 |
Target: 5'- cCAGCUCCGGgguuucuuuCGCgGCCGCcacCAGgCGg -3' miRNA: 3'- aGUCGAGGCC---------GCGgCGGCGc--GUCgGC- -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 12409 | 0.68 | 0.129511 |
Target: 5'- aCGGCUggUUGGUGCCGa-GgGCGGCCGg -3' miRNA: 3'- aGUCGA--GGCCGCGGCggCgCGUCGGC- -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 26404 | 0.68 | 0.126079 |
Target: 5'- gUAGCUCUGGCcaucgacccgGCCGCCgaacGCGCucuGCUGc -3' miRNA: 3'- aGUCGAGGCCG----------CGGCGG----CGCGu--CGGC- -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 32960 | 0.68 | 0.126079 |
Target: 5'- -uGGCgcgcCCGGUGCaGCgGCGCuGGCCGg -3' miRNA: 3'- agUCGa---GGCCGCGgCGgCGCG-UCGGC- -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 14475 | 0.68 | 0.126079 |
Target: 5'- aUCAGCUuggccgccUCGGUGCUggcacgaauuGCCGC-CAGCCGc -3' miRNA: 3'- -AGUCGA--------GGCCGCGG----------CGGCGcGUCGGC- -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 37728 | 0.69 | 0.119466 |
Target: 5'- cCGGCgaCCGGCGUcuacuCGCUguucuGCGCAGCUGa -3' miRNA: 3'- aGUCGa-GGCCGCG-----GCGG-----CGCGUCGGC- -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 32767 | 0.69 | 0.107199 |
Target: 5'- gCGGaUCUgGGCGCUGCCgGUGUGGCCGg -3' miRNA: 3'- aGUCgAGG-CCGCGGCGG-CGCGUCGGC- -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 22991 | 0.7 | 0.098516 |
Target: 5'- cCAGUccaccccgauagUCCGGCccaacucGCCGCCGCGCGacugaaucGCCa -3' miRNA: 3'- aGUCG------------AGGCCG-------CGGCGGCGCGU--------CGGc -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 29415 | 0.7 | 0.090998 |
Target: 5'- gUCAGCcgaucgCUGGCcgacGuuGCCGCGCAGCa- -3' miRNA: 3'- -AGUCGa-----GGCCG----CggCGGCGCGUCGgc -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 16186 | 0.7 | 0.088534 |
Target: 5'- aCGGCUUCGGCGCgG-UGCGCGGUa- -3' miRNA: 3'- aGUCGAGGCCGCGgCgGCGCGUCGgc -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 17449 | 0.7 | 0.088534 |
Target: 5'- cCAGCagCGGCGauggCGCCGCaGCuGGCCGa -3' miRNA: 3'- aGUCGagGCCGCg---GCGGCG-CG-UCGGC- -5' |
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30495 | 5' | -65.6 | NC_006548.1 | + | 12932 | 0.7 | 0.086134 |
Target: 5'- -uGGCUCgcgcugagcgCGGUGCUguGCgGCGCAGCCGu -3' miRNA: 3'- agUCGAG----------GCCGCGG--CGgCGCGUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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