Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30498 | 5' | -57.1 | NC_006548.1 | + | 22956 | 0.66 | 0.568573 |
Target: 5'- cGCCGGCcucaaggaccgcuucAUCGuGCAgCGcgaGCGUCUGGa -3' miRNA: 3'- -CGGCCGc--------------UAGCuCGUgGC---UGCAGACU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 11747 | 0.66 | 0.567486 |
Target: 5'- uGCgCGGCGcgCGgcGGCGCCGGgGUUg-- -3' miRNA: 3'- -CG-GCCGCuaGC--UCGUGGCUgCAGacu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 17064 | 0.66 | 0.556645 |
Target: 5'- aGUCGGCGGUCccgGAGCGcCCGGCuUCc-- -3' miRNA: 3'- -CGGCCGCUAG---CUCGU-GGCUGcAGacu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 1442 | 0.66 | 0.545865 |
Target: 5'- gGCCGGCGG-CGGGCAgaUCGAgaaaGUCgGGu -3' miRNA: 3'- -CGGCCGCUaGCUCGU--GGCUg---CAGaCU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 5658 | 0.66 | 0.545865 |
Target: 5'- aGCCaGGCcAUCGAGU-CCGugGUCc-- -3' miRNA: 3'- -CGG-CCGcUAGCUCGuGGCugCAGacu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 1210 | 0.66 | 0.524515 |
Target: 5'- aGCCGGaUGAUCGccGCACaGGCGUugCUGGc -3' miRNA: 3'- -CGGCC-GCUAGCu-CGUGgCUGCA--GACU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 21753 | 0.66 | 0.513959 |
Target: 5'- cGCCGGUGccgcaggcggauAUCGAcaacGCACCGACGa---- -3' miRNA: 3'- -CGGCCGC------------UAGCU----CGUGGCUGCagacu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 21206 | 0.66 | 0.513959 |
Target: 5'- gGCgGGCGG-CGAugGCGCCGcuggcACGUUUGGc -3' miRNA: 3'- -CGgCCGCUaGCU--CGUGGC-----UGCAGACU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 13416 | 0.66 | 0.512908 |
Target: 5'- cGgCGGCGGgccaggucgcuguUUGAGCGCCGGCGg---- -3' miRNA: 3'- -CgGCCGCU-------------AGCUCGUGGCUGCagacu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 14395 | 0.67 | 0.493116 |
Target: 5'- gGCUGGCGGcaauUCGugccAGCACCGagGCGgccaagCUGAu -3' miRNA: 3'- -CGGCCGCU----AGC----UCGUGGC--UGCa-----GACU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 27384 | 0.67 | 0.48284 |
Target: 5'- gGCCaGGCGAgcgagaGAGCGCUGA-GUCgGAu -3' miRNA: 3'- -CGG-CCGCUag----CUCGUGGCUgCAGaCU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 21956 | 0.67 | 0.472669 |
Target: 5'- cGCCGGUGAUcacCGAuGCGCUGgauaGCGUCa-- -3' miRNA: 3'- -CGGCCGCUA---GCU-CGUGGC----UGCAGacu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 1522 | 0.67 | 0.462607 |
Target: 5'- uGCCGGCGAccgccUCG-GCG-CGAUG-CUGAc -3' miRNA: 3'- -CGGCCGCU-----AGCuCGUgGCUGCaGACU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 33571 | 0.67 | 0.452659 |
Target: 5'- cGCuUGGCGAUCGAcagcgcgcuggGCACCGuuGUCcGGc -3' miRNA: 3'- -CG-GCCGCUAGCU-----------CGUGGCugCAGaCU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 22548 | 0.68 | 0.442829 |
Target: 5'- cGCCGGCGGaggaGAGCcugAUCGACGgccaaCUGGc -3' miRNA: 3'- -CGGCCGCUag--CUCG---UGGCUGCa----GACU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 33626 | 0.68 | 0.43312 |
Target: 5'- cGCUGuCGAUCGccaAGCGCuCGACGUCg-- -3' miRNA: 3'- -CGGCcGCUAGC---UCGUG-GCUGCAGacu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 21893 | 0.68 | 0.43312 |
Target: 5'- gGCCucGCGAUCGAGCAggaucagguUgGugGUCUGc -3' miRNA: 3'- -CGGc-CGCUAGCUCGU---------GgCugCAGACu -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 33146 | 0.69 | 0.394653 |
Target: 5'- gGCCGGUGcUCGGGCAgCGGCccgaggaGUCcGAa -3' miRNA: 3'- -CGGCCGCuAGCUCGUgGCUG-------CAGaCU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 20078 | 0.69 | 0.369685 |
Target: 5'- gGCCGGCGcAUUGAGCuuggggugGCCGAUGacgagcggggccucgCUGAg -3' miRNA: 3'- -CGGCCGC-UAGCUCG--------UGGCUGCa--------------GACU- -5' |
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30498 | 5' | -57.1 | NC_006548.1 | + | 6021 | 0.69 | 0.351681 |
Target: 5'- aCCGGUGAUCGGGCA--GACGUucagccgucaggCUGAg -3' miRNA: 3'- cGGCCGCUAGCUCGUggCUGCA------------GACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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