miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30498 5' -57.1 NC_006548.1 + 22956 0.66 0.568573
Target:  5'- cGCCGGCcucaaggaccgcuucAUCGuGCAgCGcgaGCGUCUGGa -3'
miRNA:   3'- -CGGCCGc--------------UAGCuCGUgGC---UGCAGACU- -5'
30498 5' -57.1 NC_006548.1 + 11747 0.66 0.567486
Target:  5'- uGCgCGGCGcgCGgcGGCGCCGGgGUUg-- -3'
miRNA:   3'- -CG-GCCGCuaGC--UCGUGGCUgCAGacu -5'
30498 5' -57.1 NC_006548.1 + 17064 0.66 0.556645
Target:  5'- aGUCGGCGGUCccgGAGCGcCCGGCuUCc-- -3'
miRNA:   3'- -CGGCCGCUAG---CUCGU-GGCUGcAGacu -5'
30498 5' -57.1 NC_006548.1 + 1442 0.66 0.545865
Target:  5'- gGCCGGCGG-CGGGCAgaUCGAgaaaGUCgGGu -3'
miRNA:   3'- -CGGCCGCUaGCUCGU--GGCUg---CAGaCU- -5'
30498 5' -57.1 NC_006548.1 + 5658 0.66 0.545865
Target:  5'- aGCCaGGCcAUCGAGU-CCGugGUCc-- -3'
miRNA:   3'- -CGG-CCGcUAGCUCGuGGCugCAGacu -5'
30498 5' -57.1 NC_006548.1 + 1210 0.66 0.524515
Target:  5'- aGCCGGaUGAUCGccGCACaGGCGUugCUGGc -3'
miRNA:   3'- -CGGCC-GCUAGCu-CGUGgCUGCA--GACU- -5'
30498 5' -57.1 NC_006548.1 + 21753 0.66 0.513959
Target:  5'- cGCCGGUGccgcaggcggauAUCGAcaacGCACCGACGa---- -3'
miRNA:   3'- -CGGCCGC------------UAGCU----CGUGGCUGCagacu -5'
30498 5' -57.1 NC_006548.1 + 21206 0.66 0.513959
Target:  5'- gGCgGGCGG-CGAugGCGCCGcuggcACGUUUGGc -3'
miRNA:   3'- -CGgCCGCUaGCU--CGUGGC-----UGCAGACU- -5'
30498 5' -57.1 NC_006548.1 + 13416 0.66 0.512908
Target:  5'- cGgCGGCGGgccaggucgcuguUUGAGCGCCGGCGg---- -3'
miRNA:   3'- -CgGCCGCU-------------AGCUCGUGGCUGCagacu -5'
30498 5' -57.1 NC_006548.1 + 14395 0.67 0.493116
Target:  5'- gGCUGGCGGcaauUCGugccAGCACCGagGCGgccaagCUGAu -3'
miRNA:   3'- -CGGCCGCU----AGC----UCGUGGC--UGCa-----GACU- -5'
30498 5' -57.1 NC_006548.1 + 27384 0.67 0.48284
Target:  5'- gGCCaGGCGAgcgagaGAGCGCUGA-GUCgGAu -3'
miRNA:   3'- -CGG-CCGCUag----CUCGUGGCUgCAGaCU- -5'
30498 5' -57.1 NC_006548.1 + 21956 0.67 0.472669
Target:  5'- cGCCGGUGAUcacCGAuGCGCUGgauaGCGUCa-- -3'
miRNA:   3'- -CGGCCGCUA---GCU-CGUGGC----UGCAGacu -5'
30498 5' -57.1 NC_006548.1 + 1522 0.67 0.462607
Target:  5'- uGCCGGCGAccgccUCG-GCG-CGAUG-CUGAc -3'
miRNA:   3'- -CGGCCGCU-----AGCuCGUgGCUGCaGACU- -5'
30498 5' -57.1 NC_006548.1 + 33571 0.67 0.452659
Target:  5'- cGCuUGGCGAUCGAcagcgcgcuggGCACCGuuGUCcGGc -3'
miRNA:   3'- -CG-GCCGCUAGCU-----------CGUGGCugCAGaCU- -5'
30498 5' -57.1 NC_006548.1 + 22548 0.68 0.442829
Target:  5'- cGCCGGCGGaggaGAGCcugAUCGACGgccaaCUGGc -3'
miRNA:   3'- -CGGCCGCUag--CUCG---UGGCUGCa----GACU- -5'
30498 5' -57.1 NC_006548.1 + 21893 0.68 0.43312
Target:  5'- gGCCucGCGAUCGAGCAggaucagguUgGugGUCUGc -3'
miRNA:   3'- -CGGc-CGCUAGCUCGU---------GgCugCAGACu -5'
30498 5' -57.1 NC_006548.1 + 33626 0.68 0.43312
Target:  5'- cGCUGuCGAUCGccaAGCGCuCGACGUCg-- -3'
miRNA:   3'- -CGGCcGCUAGC---UCGUG-GCUGCAGacu -5'
30498 5' -57.1 NC_006548.1 + 33146 0.69 0.394653
Target:  5'- gGCCGGUGcUCGGGCAgCGGCccgaggaGUCcGAa -3'
miRNA:   3'- -CGGCCGCuAGCUCGUgGCUG-------CAGaCU- -5'
30498 5' -57.1 NC_006548.1 + 20078 0.69 0.369685
Target:  5'- gGCCGGCGcAUUGAGCuuggggugGCCGAUGacgagcggggccucgCUGAg -3'
miRNA:   3'- -CGGCCGC-UAGCUCG--------UGGCUGCa--------------GACU- -5'
30498 5' -57.1 NC_006548.1 + 6021 0.69 0.351681
Target:  5'- aCCGGUGAUCGGGCA--GACGUucagccgucaggCUGAg -3'
miRNA:   3'- cGGCCGCUAGCUCGUggCUGCA------------GACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.