miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3050 5' -53.8 NC_001493.1 + 61942 0.66 0.964064
Target:  5'- --cCGAGAGGUCgaAUC-CGGcGGaUCCc -3'
miRNA:   3'- gaaGCUCUCCAGg-UAGuGCCaCC-AGG- -5'
3050 5' -53.8 NC_001493.1 + 69268 0.66 0.963046
Target:  5'- uCUUCGGaauacuguGGGuugaacagggcccuGUCCGUCACGG-GGUUCg -3'
miRNA:   3'- -GAAGCU--------CUC--------------CAGGUAGUGCCaCCAGG- -5'
3050 5' -53.8 NC_001493.1 + 119425 0.66 0.960593
Target:  5'- uUUCGGGAcaugagccGGUCCGUC-CGG-GGUg- -3'
miRNA:   3'- gAAGCUCU--------CCAGGUAGuGCCaCCAgg -5'
3050 5' -53.8 NC_001493.1 + 5495 0.66 0.960593
Target:  5'- ---gGAGAGuuUCCGUCACGGUGc-CCa -3'
miRNA:   3'- gaagCUCUCc-AGGUAGUGCCACcaGG- -5'
3050 5' -53.8 NC_001493.1 + 59845 0.66 0.960593
Target:  5'- -aUCGGGAcGGUggucacaaCCGUCACGGacuacacgGGUCg -3'
miRNA:   3'- gaAGCUCU-CCA--------GGUAGUGCCa-------CCAGg -5'
3050 5' -53.8 NC_001493.1 + 3871 0.66 0.960593
Target:  5'- uUUCGGGAcaugagccGGUCCGUC-CGG-GGUg- -3'
miRNA:   3'- gAAGCUCU--------CCAGGUAGuGCCaCCAgg -5'
3050 5' -53.8 NC_001493.1 + 27609 0.66 0.95297
Target:  5'- -cUCGAGGGGaCCcgCGCGGgcucgGGaUCg -3'
miRNA:   3'- gaAGCUCUCCaGGuaGUGCCa----CC-AGg -5'
3050 5' -53.8 NC_001493.1 + 105325 0.66 0.95297
Target:  5'- --gCGAGAcaGGUCUugagCACGG-GGUCUc -3'
miRNA:   3'- gaaGCUCU--CCAGGua--GUGCCaCCAGG- -5'
3050 5' -53.8 NC_001493.1 + 30382 0.66 0.952565
Target:  5'- --cCGGGAucGGUUCAUCGCcaugaccGG-GGUCCa -3'
miRNA:   3'- gaaGCUCU--CCAGGUAGUG-------CCaCCAGG- -5'
3050 5' -53.8 NC_001493.1 + 84251 0.67 0.944413
Target:  5'- gUUCGAuc-GUCCAUCGCuG-GGUCCa -3'
miRNA:   3'- gAAGCUcucCAGGUAGUGcCaCCAGG- -5'
3050 5' -53.8 NC_001493.1 + 85358 0.67 0.944413
Target:  5'- ---aGAcuGAGGUCUAUCugGGUcGUCUu -3'
miRNA:   3'- gaagCU--CUCCAGGUAGugCCAcCAGG- -5'
3050 5' -53.8 NC_001493.1 + 17359 0.67 0.934897
Target:  5'- -cUCGAGAcucGGUCuCAUCGCaG-GGUCUc -3'
miRNA:   3'- gaAGCUCU---CCAG-GUAGUGcCaCCAGG- -5'
3050 5' -53.8 NC_001493.1 + 132913 0.67 0.934897
Target:  5'- -cUCGAGAcucGGUCuCAUCGCaG-GGUCUc -3'
miRNA:   3'- gaAGCUCU---CCAG-GUAGUGcCaCCAGG- -5'
3050 5' -53.8 NC_001493.1 + 113581 0.67 0.924407
Target:  5'- -gUCGuGuGGaaCCAUCGgGGUGGUCg -3'
miRNA:   3'- gaAGCuCuCCa-GGUAGUgCCACCAGg -5'
3050 5' -53.8 NC_001493.1 + 22032 0.68 0.900509
Target:  5'- -cUCGGGaAGGUCUAUCGuguCGGgauggGGUUCu -3'
miRNA:   3'- gaAGCUC-UCCAGGUAGU---GCCa----CCAGG- -5'
3050 5' -53.8 NC_001493.1 + 111630 0.68 0.887127
Target:  5'- -gUCGucGAGGUCUcgCuCGGaggGGUCCg -3'
miRNA:   3'- gaAGCu-CUCCAGGuaGuGCCa--CCAGG- -5'
3050 5' -53.8 NC_001493.1 + 114361 0.69 0.857645
Target:  5'- -gUCGAccGGGGUcaCCGaCACGGUGGUUg -3'
miRNA:   3'- gaAGCU--CUCCA--GGUaGUGCCACCAGg -5'
3050 5' -53.8 NC_001493.1 + 101962 0.69 0.857645
Target:  5'- aCUUCGgaAGAGGgggGUCugGGUGG-CCa -3'
miRNA:   3'- -GAAGC--UCUCCaggUAGugCCACCaGG- -5'
3050 5' -53.8 NC_001493.1 + 112189 0.69 0.849739
Target:  5'- ---aGAGAuaccgaugccGGUCCAUUGCGGUGGcUCg -3'
miRNA:   3'- gaagCUCU----------CCAGGUAGUGCCACC-AGg -5'
3050 5' -53.8 NC_001493.1 + 102452 0.69 0.849739
Target:  5'- -gUCGGGGGGUCgCG--ACGGccGGUCCu -3'
miRNA:   3'- gaAGCUCUCCAG-GUagUGCCa-CCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.