miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30506 3' -59.9 NC_006548.1 + 11698 1.1 0.000201
Target:  5'- cGCGCGCCGCGCAUGACCAGCUGGACGc -3'
miRNA:   3'- -CGCGCGGCGCGUACUGGUCGACCUGC- -5'
30506 3' -59.9 NC_006548.1 + 19319 0.79 0.041775
Target:  5'- uGCGCaaccuGCUGCGCu--ACCAGCUGGACGg -3'
miRNA:   3'- -CGCG-----CGGCGCGuacUGGUCGACCUGC- -5'
30506 3' -59.9 NC_006548.1 + 32872 0.72 0.142204
Target:  5'- uGUGCGCCGgcCGCgGUGACgcuugccagCAGCUGGAUGu -3'
miRNA:   3'- -CGCGCGGC--GCG-UACUG---------GUCGACCUGC- -5'
30506 3' -59.9 NC_006548.1 + 28602 0.72 0.150234
Target:  5'- -aGCGCCGCGaCcUGGCCGGCgccgagcaGGACu -3'
miRNA:   3'- cgCGCGGCGC-GuACUGGUCGa-------CCUGc -5'
30506 3' -59.9 NC_006548.1 + 23864 0.71 0.163052
Target:  5'- uCGCGCCaccgGCAUGGCCGGC-GGGCu -3'
miRNA:   3'- cGCGCGGcg--CGUACUGGUCGaCCUGc -5'
30506 3' -59.9 NC_006548.1 + 14355 0.71 0.167539
Target:  5'- cGUGCaGCCGUGCAUcgcuacGGCCagaAGCUGGAgCGg -3'
miRNA:   3'- -CGCG-CGGCGCGUA------CUGG---UCGACCU-GC- -5'
30506 3' -59.9 NC_006548.1 + 14660 0.71 0.175421
Target:  5'- cGCGCGCCagGCGCugcucgcugagcagAaGGCCaAGCUGGAUGc -3'
miRNA:   3'- -CGCGCGG--CGCG--------------UaCUGG-UCGACCUGC- -5'
30506 3' -59.9 NC_006548.1 + 18797 0.7 0.196846
Target:  5'- -gGCGUCGagcaGCAcGGCCugcGGCUGGGCGa -3'
miRNA:   3'- cgCGCGGCg---CGUaCUGG---UCGACCUGC- -5'
30506 3' -59.9 NC_006548.1 + 6083 0.7 0.207021
Target:  5'- uCGCGCCagggguuGCGgGUGAUCAGCacacggucgUGGACGu -3'
miRNA:   3'- cGCGCGG-------CGCgUACUGGUCG---------ACCUGC- -5'
30506 3' -59.9 NC_006548.1 + 1190 0.7 0.212556
Target:  5'- gGCGUugcugGCCGCGCAgacGGCCAGgcucgcucgcgaaUUGGGCGu -3'
miRNA:   3'- -CGCG-----CGGCGCGUa--CUGGUC-------------GACCUGC- -5'
30506 3' -59.9 NC_006548.1 + 15219 0.69 0.239059
Target:  5'- uGCGUccGCCGCGCuugccGGCCugcgcguccggguuGCUGGACa -3'
miRNA:   3'- -CGCG--CGGCGCGua---CUGGu-------------CGACCUGc -5'
30506 3' -59.9 NC_006548.1 + 32961 0.68 0.262204
Target:  5'- gGCGCGCCcggugcagcgGCGC-UGGCCGGCcGG-Cu -3'
miRNA:   3'- -CGCGCGG----------CGCGuACUGGUCGaCCuGc -5'
30506 3' -59.9 NC_006548.1 + 27276 0.68 0.262204
Target:  5'- aGCGCGuuGCuCGgucgccGCCuGCUGGACGc -3'
miRNA:   3'- -CGCGCggCGcGUac----UGGuCGACCUGC- -5'
30506 3' -59.9 NC_006548.1 + 5675 0.68 0.268948
Target:  5'- gGCGUGCCG-Gaa-GACCAGCUcGACGc -3'
miRNA:   3'- -CGCGCGGCgCguaCUGGUCGAcCUGC- -5'
30506 3' -59.9 NC_006548.1 + 13907 0.68 0.282856
Target:  5'- uGCGCaGCUGCGCGUuuuCCAGCUucACGg -3'
miRNA:   3'- -CGCG-CGGCGCGUAcu-GGUCGAccUGC- -5'
30506 3' -59.9 NC_006548.1 + 8764 0.68 0.282856
Target:  5'- gGCGaCGUCGUGC--GACCAGUcgGGAUGu -3'
miRNA:   3'- -CGC-GCGGCGCGuaCUGGUCGa-CCUGC- -5'
30506 3' -59.9 NC_006548.1 + 29188 0.68 0.290021
Target:  5'- uUGCuGCCGCGCGgccaguucgcUGacgagaccgGCCuGCUGGGCGg -3'
miRNA:   3'- cGCG-CGGCGCGU----------AC---------UGGuCGACCUGC- -5'
30506 3' -59.9 NC_006548.1 + 34814 0.68 0.290021
Target:  5'- aGCGCauCUGCGCAguguaccggggcUGACCAGCcGGcCGg -3'
miRNA:   3'- -CGCGc-GGCGCGU------------ACUGGUCGaCCuGC- -5'
30506 3' -59.9 NC_006548.1 + 2829 0.68 0.290021
Target:  5'- uGCGUuCCGCGUG-GACCaAGCUGGGa- -3'
miRNA:   3'- -CGCGcGGCGCGUaCUGG-UCGACCUgc -5'
30506 3' -59.9 NC_006548.1 + 33315 0.68 0.297328
Target:  5'- uGCgGCGCUGCGCA--GCCuGCUGuACGc -3'
miRNA:   3'- -CG-CGCGGCGCGUacUGGuCGACcUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.