miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30506 3' -59.9 NC_006548.1 + 1190 0.7 0.212556
Target:  5'- gGCGUugcugGCCGCGCAgacGGCCAGgcucgcucgcgaaUUGGGCGu -3'
miRNA:   3'- -CGCG-----CGGCGCGUa--CUGGUC-------------GACCUGC- -5'
30506 3' -59.9 NC_006548.1 + 2829 0.68 0.290021
Target:  5'- uGCGUuCCGCGUG-GACCaAGCUGGGa- -3'
miRNA:   3'- -CGCGcGGCGCGUaCUGG-UCGACCUgc -5'
30506 3' -59.9 NC_006548.1 + 3602 0.67 0.304776
Target:  5'- aGCGagaGCCGUGCcUGACgCaacuggugccgGGCUGGugGc -3'
miRNA:   3'- -CGCg--CGGCGCGuACUG-G-----------UCGACCugC- -5'
30506 3' -59.9 NC_006548.1 + 3991 0.68 0.297328
Target:  5'- uGCGCGaugguuUCGCGaagGACCaggAGCUGGugGa -3'
miRNA:   3'- -CGCGC------GGCGCguaCUGG---UCGACCugC- -5'
30506 3' -59.9 NC_006548.1 + 5675 0.68 0.268948
Target:  5'- gGCGUGCCG-Gaa-GACCAGCUcGACGc -3'
miRNA:   3'- -CGCGCGGCgCguaCUGGUCGAcCUGC- -5'
30506 3' -59.9 NC_006548.1 + 5773 0.67 0.335995
Target:  5'- cCGUGCCGCGUcgcggcauaaagGUGGgCAGUUGGGu- -3'
miRNA:   3'- cGCGCGGCGCG------------UACUgGUCGACCUgc -5'
30506 3' -59.9 NC_006548.1 + 6083 0.7 0.207021
Target:  5'- uCGCGCCagggguuGCGgGUGAUCAGCacacggucgUGGACGu -3'
miRNA:   3'- cGCGCGG-------CGCgUACUGGUCG---------ACCUGC- -5'
30506 3' -59.9 NC_006548.1 + 6457 0.66 0.360901
Target:  5'- cCGCGCCGCGCcUGGCgCGuGCacGAUGa -3'
miRNA:   3'- cGCGCGGCGCGuACUG-GU-CGacCUGC- -5'
30506 3' -59.9 NC_006548.1 + 7246 0.66 0.354976
Target:  5'- -aGCGCCGUGCGcugccccUGACCGGCgcucuguagcugccGGuCGa -3'
miRNA:   3'- cgCGCGGCGCGU-------ACUGGUCGa-------------CCuGC- -5'
30506 3' -59.9 NC_006548.1 + 8590 0.67 0.344156
Target:  5'- cCGCGCUGCGCGuccugcgcguucUGAUCGcGCUgaaaGGACa -3'
miRNA:   3'- cGCGCGGCGCGU------------ACUGGU-CGA----CCUGc -5'
30506 3' -59.9 NC_006548.1 + 8764 0.68 0.282856
Target:  5'- gGCGaCGUCGUGC--GACCAGUcgGGAUGu -3'
miRNA:   3'- -CGC-GCGGCGCGuaCUGGUCGa-CCUGC- -5'
30506 3' -59.9 NC_006548.1 + 9356 0.66 0.387065
Target:  5'- gGgGUGCUGCgGCAUGuuGCCgAGC-GGACGc -3'
miRNA:   3'- -CgCGCGGCG-CGUAC--UGG-UCGaCCUGC- -5'
30506 3' -59.9 NC_006548.1 + 11698 1.1 0.000201
Target:  5'- cGCGCGCCGCGCAUGACCAGCUGGACGc -3'
miRNA:   3'- -CGCGCGGCGCGUACUGGUCGACCUGC- -5'
30506 3' -59.9 NC_006548.1 + 11747 0.67 0.320101
Target:  5'- uGCGCGgCGCGCGgcgGcGCCggGGUUGcGGCGa -3'
miRNA:   3'- -CGCGCgGCGCGUa--C-UGG--UCGAC-CUGC- -5'
30506 3' -59.9 NC_006548.1 + 13644 0.66 0.39606
Target:  5'- gGCaCGCCugGCGaacCAUGAacagcucuccuaCCGGCUGGACGc -3'
miRNA:   3'- -CGcGCGG--CGC---GUACU------------GGUCGACCUGC- -5'
30506 3' -59.9 NC_006548.1 + 13907 0.68 0.282856
Target:  5'- uGCGCaGCUGCGCGUuuuCCAGCUucACGg -3'
miRNA:   3'- -CGCG-CGGCGCGUAcu-GGUCGAccUGC- -5'
30506 3' -59.9 NC_006548.1 + 14355 0.71 0.167539
Target:  5'- cGUGCaGCCGUGCAUcgcuacGGCCagaAGCUGGAgCGg -3'
miRNA:   3'- -CGCG-CGGCGCGUA------CUGG---UCGACCU-GC- -5'
30506 3' -59.9 NC_006548.1 + 14660 0.71 0.175421
Target:  5'- cGCGCGCCagGCGCugcucgcugagcagAaGGCCaAGCUGGAUGc -3'
miRNA:   3'- -CGCGCGG--CGCG--------------UaCUGG-UCGACCUGC- -5'
30506 3' -59.9 NC_006548.1 + 15219 0.69 0.239059
Target:  5'- uGCGUccGCCGCGCuugccGGCCugcgcguccggguuGCUGGACa -3'
miRNA:   3'- -CGCG--CGGCGCGua---CUGGu-------------CGACCUGc -5'
30506 3' -59.9 NC_006548.1 + 18797 0.7 0.196846
Target:  5'- -gGCGUCGagcaGCAcGGCCugcGGCUGGGCGa -3'
miRNA:   3'- cgCGCGGCg---CGUaCUGG---UCGACCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.