Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 11698 | 1.1 | 0.000201 |
Target: 5'- cGCGCGCCGCGCAUGACCAGCUGGACGc -3' miRNA: 3'- -CGCGCGGCGCGUACUGGUCGACCUGC- -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 22903 | 0.66 | 0.352458 |
Target: 5'- gGCGauucaGUCGCGCGgcGGCgAGUUGGGCc -3' miRNA: 3'- -CGCg----CGGCGCGUa-CUGgUCGACCUGc -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 7246 | 0.66 | 0.354976 |
Target: 5'- -aGCGCCGUGCGcugccccUGACCGGCgcucuguagcugccGGuCGa -3' miRNA: 3'- cgCGCGGCGCGU-------ACUGGUCGa-------------CCuGC- -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 6457 | 0.66 | 0.360901 |
Target: 5'- cCGCGCCGCGCcUGGCgCGuGCacGAUGa -3' miRNA: 3'- cGCGCGGCGCGuACUG-GU-CGacCUGC- -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 9356 | 0.66 | 0.387065 |
Target: 5'- gGgGUGCUGCgGCAUGuuGCCgAGC-GGACGc -3' miRNA: 3'- -CgCGCGGCG-CGUAC--UGG-UCGaCCUGC- -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 25463 | 0.66 | 0.387065 |
Target: 5'- uCGCGCCGagGCAcGccuCCGcGCUGGGCa -3' miRNA: 3'- cGCGCGGCg-CGUaCu--GGU-CGACCUGc -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 13644 | 0.66 | 0.39606 |
Target: 5'- gGCaCGCCugGCGaacCAUGAacagcucuccuaCCGGCUGGACGc -3' miRNA: 3'- -CGcGCGG--CGC---GUACU------------GGUCGACCUGC- -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 29830 | 0.66 | 0.39606 |
Target: 5'- cCGCaacccaGCCGgGCAUGACCccgcuGCUccuGGACa -3' miRNA: 3'- cGCG------CGGCgCGUACUGGu----CGA---CCUGc -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 35880 | 0.66 | 0.39606 |
Target: 5'- gGCGCGauCCGCGC--GGCCGGC-GG-CGu -3' miRNA: 3'- -CGCGC--GGCGCGuaCUGGUCGaCCuGC- -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 33586 | 0.66 | 0.352458 |
Target: 5'- aGCGCGCUGgGCAccguUGuCCGGCcgaGcGACGu -3' miRNA: 3'- -CGCGCGGCgCGU----ACuGGUCGa--C-CUGC- -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 5773 | 0.67 | 0.335995 |
Target: 5'- cCGUGCCGCGUcgcggcauaaagGUGGgCAGUUGGGu- -3' miRNA: 3'- cGCGCGGCGCG------------UACUgGUCGACCUgc -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 19319 | 0.79 | 0.041775 |
Target: 5'- uGCGCaaccuGCUGCGCu--ACCAGCUGGACGg -3' miRNA: 3'- -CGCG-----CGGCGCGuacUGGUCGACCUGC- -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 14355 | 0.71 | 0.167539 |
Target: 5'- cGUGCaGCCGUGCAUcgcuacGGCCagaAGCUGGAgCGg -3' miRNA: 3'- -CGCG-CGGCGCGUA------CUGG---UCGACCU-GC- -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 14660 | 0.71 | 0.175421 |
Target: 5'- cGCGCGCCagGCGCugcucgcugagcagAaGGCCaAGCUGGAUGc -3' miRNA: 3'- -CGCGCGG--CGCG--------------UaCUGG-UCGACCUGC- -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 6083 | 0.7 | 0.207021 |
Target: 5'- uCGCGCCagggguuGCGgGUGAUCAGCacacggucgUGGACGu -3' miRNA: 3'- cGCGCGG-------CGCgUACUGGUCG---------ACCUGC- -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 32961 | 0.68 | 0.262204 |
Target: 5'- gGCGCGCCcggugcagcgGCGC-UGGCCGGCcGG-Cu -3' miRNA: 3'- -CGCGCGG----------CGCGuACUGGUCGaCCuGc -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 8764 | 0.68 | 0.282856 |
Target: 5'- gGCGaCGUCGUGC--GACCAGUcgGGAUGu -3' miRNA: 3'- -CGC-GCGGCGCGuaCUGGUCGa-CCUGC- -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 34814 | 0.68 | 0.290021 |
Target: 5'- aGCGCauCUGCGCAguguaccggggcUGACCAGCcGGcCGg -3' miRNA: 3'- -CGCGc-GGCGCGU------------ACUGGUCGaCCuGC- -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 33315 | 0.68 | 0.297328 |
Target: 5'- uGCgGCGCUGCGCA--GCCuGCUGuACGc -3' miRNA: 3'- -CG-CGCGGCGCGUacUGGuCGACcUGC- -5' |
|||||||
30506 | 3' | -59.9 | NC_006548.1 | + | 29961 | 0.66 | 0.360901 |
Target: 5'- cGCGUGCCgcacaGCGCcgGACCAGUcaUGcaGCGc -3' miRNA: 3'- -CGCGCGG-----CGCGuaCUGGUCG--ACc-UGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home