miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30510 5' -55.4 NC_006548.1 + 13036 1.12 0.00025
Target:  5'- cUGCUCAACCUGCAGCUGCAGCACACCa -3'
miRNA:   3'- -ACGAGUUGGACGUCGACGUCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 32161 0.83 0.041364
Target:  5'- cGcCUCGACCUuggcugGCAGCuaUGCGGCACACCa -3'
miRNA:   3'- aC-GAGUUGGA------CGUCG--ACGUCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 3850 0.8 0.069378
Target:  5'- cGgUCuACCUGCAGgaGCGGCGCGCUc -3'
miRNA:   3'- aCgAGuUGGACGUCgaCGUCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 36970 0.78 0.090616
Target:  5'- aGUugaUCGGCCUGCAGCagccgguUGCGGUGCGCCc -3'
miRNA:   3'- aCG---AGUUGGACGUCG-------ACGUCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 26429 0.78 0.090887
Target:  5'- gGCUC-ACCUGCGGCUG-AGCAaUACCu -3'
miRNA:   3'- aCGAGuUGGACGUCGACgUCGU-GUGG- -5'
30510 5' -55.4 NC_006548.1 + 27690 0.78 0.096463
Target:  5'- gGCUUGGCCUGgAGCUGCucaACACCa -3'
miRNA:   3'- aCGAGUUGGACgUCGACGucgUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 18095 0.76 0.12951
Target:  5'- cGCUCGcccuugaccGCCUGCAGCUGU-GCAUAgCg -3'
miRNA:   3'- aCGAGU---------UGGACGUCGACGuCGUGUgG- -5'
30510 5' -55.4 NC_006548.1 + 14724 0.76 0.137271
Target:  5'- cUGCUCAGCgaGCAGC-GCcuGGCGCGCg -3'
miRNA:   3'- -ACGAGUUGgaCGUCGaCG--UCGUGUGg -5'
30510 5' -55.4 NC_006548.1 + 9757 0.75 0.149285
Target:  5'- aGCUCGGCCugaagccuucUGUAGCUGCuGCgugaggaACACCg -3'
miRNA:   3'- aCGAGUUGG----------ACGUCGACGuCG-------UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 7222 0.75 0.158574
Target:  5'- aGCUCuGCC-GCGGCUGCuuuGCauaGCGCCg -3'
miRNA:   3'- aCGAGuUGGaCGUCGACGu--CG---UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 36384 0.75 0.158574
Target:  5'- aGCgaggauGCCUGUcucuGGCUGCAGCuGCGCCa -3'
miRNA:   3'- aCGagu---UGGACG----UCGACGUCG-UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 28141 0.74 0.17772
Target:  5'- aGUUCGGCCUGCAgGCcGCcAGC-CGCCu -3'
miRNA:   3'- aCGAGUUGGACGU-CGaCG-UCGuGUGG- -5'
30510 5' -55.4 NC_006548.1 + 19120 0.73 0.198892
Target:  5'- gUGCUCAACgCggGCAGC-GCAGCGCugggagauCCg -3'
miRNA:   3'- -ACGAGUUG-Ga-CGUCGaCGUCGUGu-------GG- -5'
30510 5' -55.4 NC_006548.1 + 27588 0.73 0.204518
Target:  5'- ---cCAACCUGCAGUgGCAGCAgGCg -3'
miRNA:   3'- acgaGUUGGACGUCGaCGUCGUgUGg -5'
30510 5' -55.4 NC_006548.1 + 20973 0.73 0.204518
Target:  5'- aGUUCGGCCaGCaAGCUGC-GCAgCACCu -3'
miRNA:   3'- aCGAGUUGGaCG-UCGACGuCGU-GUGG- -5'
30510 5' -55.4 NC_006548.1 + 32570 0.73 0.204518
Target:  5'- cUGUUCGuCCUGCAGUUGCcagacgauGCGCGCg -3'
miRNA:   3'- -ACGAGUuGGACGUCGACGu-------CGUGUGg -5'
30510 5' -55.4 NC_006548.1 + 13199 0.73 0.214399
Target:  5'- cUGCUguACCUGCAGCaguUGCuccucggccugguuGGCGCGCg -3'
miRNA:   3'- -ACGAguUGGACGUCG---ACG--------------UCGUGUGg -5'
30510 5' -55.4 NC_006548.1 + 7331 0.72 0.254633
Target:  5'- -cCUCGACCgGCAGCUaCAGaGCGCCg -3'
miRNA:   3'- acGAGUUGGaCGUCGAcGUCgUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 3338 0.72 0.254633
Target:  5'- aGCUgGugaucACCUGCAGCaacUGCGGaCACAUCc -3'
miRNA:   3'- aCGAgU-----UGGACGUCG---ACGUC-GUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 14971 0.72 0.261562
Target:  5'- cGCUC-ACCgGCAGCauagGCGGUGgACCa -3'
miRNA:   3'- aCGAGuUGGaCGUCGa---CGUCGUgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.