miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30510 5' -55.4 NC_006548.1 + 20995 0.68 0.422721
Target:  5'- gUGCUCAcGCCauUGCAGC-GCgAGCGCAg- -3'
miRNA:   3'- -ACGAGU-UGG--ACGUCGaCG-UCGUGUgg -5'
30510 5' -55.4 NC_006548.1 + 21186 0.69 0.356845
Target:  5'- aGCUCGgacgGCCUGgccgcccaGGCUGCcgguAGCACugCg -3'
miRNA:   3'- aCGAGU----UGGACg-------UCGACG----UCGUGugG- -5'
30510 5' -55.4 NC_006548.1 + 26233 0.69 0.363099
Target:  5'- cGCUCAGCuCUcgccaggucuucaaGUGGCUGCAGgAgACCc -3'
miRNA:   3'- aCGAGUUG-GA--------------CGUCGACGUCgUgUGG- -5'
30510 5' -55.4 NC_006548.1 + 16326 0.69 0.38418
Target:  5'- -aUUCGAuCCUGCAGCgccgugGCGGCAacgACCu -3'
miRNA:   3'- acGAGUU-GGACGUCGa-----CGUCGUg--UGG- -5'
30510 5' -55.4 NC_006548.1 + 11605 0.69 0.393596
Target:  5'- gGCgu--CCUGCAGgaGCAGgAUGCCc -3'
miRNA:   3'- aCGaguuGGACGUCgaCGUCgUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 10598 0.68 0.412869
Target:  5'- aUGCUCGGCCUGUucuaaccaauccAGCUagGguGCGgACUu -3'
miRNA:   3'- -ACGAGUUGGACG------------UCGA--CguCGUgUGG- -5'
30510 5' -55.4 NC_006548.1 + 27334 0.68 0.412869
Target:  5'- cGCUCGccugGCCgaGCAGgaGCGGCAguugACCg -3'
miRNA:   3'- aCGAGU----UGGa-CGUCgaCGUCGUg---UGG- -5'
30510 5' -55.4 NC_006548.1 + 2661 0.68 0.42173
Target:  5'- gUGCUCAcgACCUGgaCAGCcucgccgauggccUGCAuuGCACGCUg -3'
miRNA:   3'- -ACGAGU--UGGAC--GUCG-------------ACGU--CGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 14383 0.68 0.422721
Target:  5'- aGCUgGAgCgGCGGCUgGCGGCaauucgugccaGCACCg -3'
miRNA:   3'- aCGAgUUgGaCGUCGA-CGUCG-----------UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 19304 0.69 0.356845
Target:  5'- cGCUCGacggccACCUGCGcaacCUGCuGCGCuACCa -3'
miRNA:   3'- aCGAGU------UGGACGUc---GACGuCGUG-UGG- -5'
30510 5' -55.4 NC_006548.1 + 16482 0.7 0.306379
Target:  5'- cUGCggCAgagcACCUggagcaGCAGCUGCAGCGCgugggcugggACCg -3'
miRNA:   3'- -ACGa-GU----UGGA------CGUCGACGUCGUG----------UGG- -5'
30510 5' -55.4 NC_006548.1 + 2189 0.71 0.296192
Target:  5'- gUGCUCAggaaguccuugcgcGCCuucUGCAGCUGUcGCuccaGCACCu -3'
miRNA:   3'- -ACGAGU--------------UGG---ACGUCGACGuCG----UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 32161 0.83 0.041364
Target:  5'- cGcCUCGACCUuggcugGCAGCuaUGCGGCACACCa -3'
miRNA:   3'- aC-GAGUUGGA------CGUCG--ACGUCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 26429 0.78 0.090887
Target:  5'- gGCUC-ACCUGCGGCUG-AGCAaUACCu -3'
miRNA:   3'- aCGAGuUGGACGUCGACgUCGU-GUGG- -5'
30510 5' -55.4 NC_006548.1 + 27690 0.78 0.096463
Target:  5'- gGCUUGGCCUGgAGCUGCucaACACCa -3'
miRNA:   3'- aCGAGUUGGACgUCGACGucgUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 7222 0.75 0.158574
Target:  5'- aGCUCuGCC-GCGGCUGCuuuGCauaGCGCCg -3'
miRNA:   3'- aCGAGuUGGaCGUCGACGu--CG---UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 19120 0.73 0.198892
Target:  5'- gUGCUCAACgCggGCAGC-GCAGCGCugggagauCCg -3'
miRNA:   3'- -ACGAGUUG-Ga-CGUCGaCGUCGUGu-------GG- -5'
30510 5' -55.4 NC_006548.1 + 27588 0.73 0.204518
Target:  5'- ---cCAACCUGCAGUgGCAGCAgGCg -3'
miRNA:   3'- acgaGUUGGACGUCGaCGUCGUgUGg -5'
30510 5' -55.4 NC_006548.1 + 35679 0.71 0.268644
Target:  5'- cGCUCGACCggacucUGgAcGCUGCGGCugAUCc -3'
miRNA:   3'- aCGAGUUGG------ACgU-CGACGUCGugUGG- -5'
30510 5' -55.4 NC_006548.1 + 7165 0.71 0.290816
Target:  5'- cGCUCAcgcACCUGUacauccuucAGCuUGCGGUACAgCg -3'
miRNA:   3'- aCGAGU---UGGACG---------UCG-ACGUCGUGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.