miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30510 5' -55.4 NC_006548.1 + 909 0.68 0.432714
Target:  5'- cUGCUCAGCCUGgcgcaGGUUGagauccCGCGCCg -3'
miRNA:   3'- -ACGAGUUGGACg----UCGACguc---GUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 970 0.66 0.573184
Target:  5'- -uCUCAACCUGCgccaGGCUGagcaguuGCugACUg -3'
miRNA:   3'- acGAGUUGGACG----UCGACgu-----CGugUGG- -5'
30510 5' -55.4 NC_006548.1 + 1040 0.68 0.433721
Target:  5'- aGCUCGGCCUGCAGgacgaugucuaucgGCAGaaGCugCa -3'
miRNA:   3'- aCGAGUUGGACGUCga------------CGUCg-UGugG- -5'
30510 5' -55.4 NC_006548.1 + 1827 0.66 0.573184
Target:  5'- aGCUCuGCuCUGCAGCguccauCAGUugACg -3'
miRNA:   3'- aCGAGuUG-GACGUCGac----GUCGugUGg -5'
30510 5' -55.4 NC_006548.1 + 2189 0.71 0.296192
Target:  5'- gUGCUCAggaaguccuugcgcGCCuucUGCAGCUGUcGCuccaGCACCu -3'
miRNA:   3'- -ACGAGU--------------UGG---ACGUCGACGuCG----UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 2334 0.66 0.528224
Target:  5'- cGCUUcguuCCUGUucgucGGCUGCgcGGCgGCGCCg -3'
miRNA:   3'- aCGAGuu--GGACG-----UCGACG--UCG-UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 2661 0.68 0.42173
Target:  5'- gUGCUCAcgACCUGgaCAGCcucgccgauggccUGCAuuGCACGCUg -3'
miRNA:   3'- -ACGAGU--UGGAC--GUCG-------------ACGU--CGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 2716 0.66 0.528224
Target:  5'- cGUcaUCGAUCUGCAgGCggcgcaggGCaAGCACGCUg -3'
miRNA:   3'- aCG--AGUUGGACGU-CGa-------CG-UCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 3338 0.72 0.254633
Target:  5'- aGCUgGugaucACCUGCAGCaacUGCGGaCACAUCc -3'
miRNA:   3'- aCGAgU-----UGGACGUCG---ACGUC-GUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 3435 0.66 0.539355
Target:  5'- cGCgUCAcCCUGUgcgAGgaGCAGCGCcgugGCCu -3'
miRNA:   3'- aCG-AGUuGGACG---UCgaCGUCGUG----UGG- -5'
30510 5' -55.4 NC_006548.1 + 3754 0.67 0.459322
Target:  5'- uUGUUCAucagugcacccucCCUGCugauuGCUG-AGCGCGCCg -3'
miRNA:   3'- -ACGAGUu------------GGACGu----CGACgUCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 3850 0.8 0.069378
Target:  5'- cGgUCuACCUGCAGgaGCGGCGCGCUc -3'
miRNA:   3'- aCgAGuUGGACGUCgaCGUCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 3877 0.67 0.484636
Target:  5'- aGCUgCAugC-GgAGCUGCAGUGCAUg -3'
miRNA:   3'- aCGA-GUugGaCgUCGACGUCGUGUGg -5'
30510 5' -55.4 NC_006548.1 + 3885 0.67 0.474005
Target:  5'- aUGCUgucCAGCUUGUGGCUGauggucuuCAGCucCACCa -3'
miRNA:   3'- -ACGA---GUUGGACGUCGAC--------GUCGu-GUGG- -5'
30510 5' -55.4 NC_006548.1 + 4252 0.67 0.4943
Target:  5'- gUGCUCGAUC-GcCGGCUGUucauucgugcggaAGaCGCACCa -3'
miRNA:   3'- -ACGAGUUGGaC-GUCGACG-------------UC-GUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 5528 0.67 0.50623
Target:  5'- cGgUCGACCUG-AGCccgGCGGCGuCGCUc -3'
miRNA:   3'- aCgAGUUGGACgUCGa--CGUCGU-GUGG- -5'
30510 5' -55.4 NC_006548.1 + 5945 0.67 0.474005
Target:  5'- aGuCUCAGCCUGaCGGCUGaacgucuGCccgauCACCg -3'
miRNA:   3'- aC-GAGUUGGAC-GUCGACgu-----CGu----GUGG- -5'
30510 5' -55.4 NC_006548.1 + 7165 0.71 0.290816
Target:  5'- cGCUCAcgcACCUGUacauccuucAGCuUGCGGUACAgCg -3'
miRNA:   3'- aCGAGU---UGGACG---------UCG-ACGUCGUGUgG- -5'
30510 5' -55.4 NC_006548.1 + 7222 0.75 0.158574
Target:  5'- aGCUCuGCC-GCGGCUGCuuuGCauaGCGCCg -3'
miRNA:   3'- aCGAGuUGGaCGUCGACGu--CG---UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 7331 0.72 0.254633
Target:  5'- -cCUCGACCgGCAGCUaCAGaGCGCCg -3'
miRNA:   3'- acGAGUUGGaCGUCGAcGUCgUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.