Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30541 | 5' | -52.1 | NC_006548.1 | + | 23877 | 1.11 | 0.000854 |
Target: 5'- cUACCGCGACAACAAAGGCGUCACUGCa -3' miRNA: 3'- -AUGGCGCUGUUGUUUCCGCAGUGACG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 7274 | 0.76 | 0.249213 |
Target: 5'- aGCCGCGGCAGagcuGGGCcuGUCGCUGg -3' miRNA: 3'- aUGGCGCUGUUguu-UCCG--CAGUGACg -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 11584 | 0.76 | 0.263126 |
Target: 5'- cGCgCGUGACGAUGAuguccGGGCGUC-CUGCa -3' miRNA: 3'- aUG-GCGCUGUUGUU-----UCCGCAGuGACG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 32480 | 0.74 | 0.308642 |
Target: 5'- cGCCGCGaACGGCAAcGGCGgcgacgGCUGCc -3' miRNA: 3'- aUGGCGC-UGUUGUUuCCGCag----UGACG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 20584 | 0.74 | 0.316787 |
Target: 5'- cGCaGCGGCGGCAGAGGCu--GCUGCg -3' miRNA: 3'- aUGgCGCUGUUGUUUCCGcagUGACG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 13012 | 0.72 | 0.416865 |
Target: 5'- gGCCGCGc---CGAGGGUGaCGCUGCg -3' miRNA: 3'- aUGGCGCuguuGUUUCCGCaGUGACG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 11742 | 0.7 | 0.5228 |
Target: 5'- gGCgCGCGGCGGCGccGGgGUUGCgGCg -3' miRNA: 3'- aUG-GCGCUGUUGUuuCCgCAGUGaCG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 21210 | 0.7 | 0.534003 |
Target: 5'- aUACgGCgGGCGGCGAuGGCGcCGCUGg -3' miRNA: 3'- -AUGgCG-CUGUUGUUuCCGCaGUGACg -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 15998 | 0.7 | 0.534003 |
Target: 5'- gGCUGCgGGCAACAuccGCuUCACUGCg -3' miRNA: 3'- aUGGCG-CUGUUGUuucCGcAGUGACG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 28695 | 0.7 | 0.556653 |
Target: 5'- aGCgGCGACcuacGGCAAGGGCcggGCUGCg -3' miRNA: 3'- aUGgCGCUG----UUGUUUCCGcagUGACG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 29437 | 0.7 | 0.556653 |
Target: 5'- uUGCCGCG-CAGCAgcuggcccagAAGGCa--ACUGCg -3' miRNA: 3'- -AUGGCGCuGUUGU----------UUCCGcagUGACG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 26303 | 0.69 | 0.57612 |
Target: 5'- cGCCGCGcgcuuuuacuaccuGCAGCAGAGcGCGUUcgGCgGCc -3' miRNA: 3'- aUGGCGC--------------UGUUGUUUC-CGCAG--UGaCG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 7226 | 0.69 | 0.591108 |
Target: 5'- cUGCCGCGGCugcuuuGCAuAGcGCcGUgCGCUGCc -3' miRNA: 3'- -AUGGCGCUGu-----UGUuUC-CG-CA-GUGACG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 27775 | 0.69 | 0.614287 |
Target: 5'- -cCUGCGcACGAucuuCGAAGGCGUCGCcucgGCc -3' miRNA: 3'- auGGCGC-UGUU----GUUUCCGCAGUGa---CG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 33301 | 0.69 | 0.614287 |
Target: 5'- gGCCGCGAgGAgCAu--GCGgCGCUGCg -3' miRNA: 3'- aUGGCGCUgUU-GUuucCGCaGUGACG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 9341 | 0.68 | 0.637535 |
Target: 5'- cAUCGCGAUcuGGCAGGGGU---GCUGCg -3' miRNA: 3'- aUGGCGCUG--UUGUUUCCGcagUGACG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 23908 | 0.68 | 0.649156 |
Target: 5'- aACCGCGACggUGAuGGCGaagugCACguuUGCc -3' miRNA: 3'- aUGGCGCUGuuGUUuCCGCa----GUG---ACG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 7780 | 0.68 | 0.649156 |
Target: 5'- -uCCGCGAgGACAAggaagcgcagGGGCG-C-CUGCu -3' miRNA: 3'- auGGCGCUgUUGUU----------UCCGCaGuGACG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 35511 | 0.68 | 0.649156 |
Target: 5'- gGCCGUGGCAaggaucGCGGccugcuggaccAGGCGUCAUaucGCa -3' miRNA: 3'- aUGGCGCUGU------UGUU-----------UCCGCAGUGa--CG- -5' |
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30541 | 5' | -52.1 | NC_006548.1 | + | 28600 | 0.68 | 0.659601 |
Target: 5'- cGCCGCGACcuggccggcgccgAGCAGGacuGCGUCAC-GCu -3' miRNA: 3'- aUGGCGCUG-------------UUGUUUc--CGCAGUGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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