miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30541 5' -52.1 NC_006548.1 + 1181 0.66 0.739328
Target:  5'- gGCCGCgcaGACGgccaggcucgcucGCGAauuGGGCGUCagcgaugcugaGCUGCg -3'
miRNA:   3'- aUGGCG---CUGU-------------UGUU---UCCGCAG-----------UGACG- -5'
30541 5' -52.1 NC_006548.1 + 4491 0.67 0.683867
Target:  5'- gAUCGCGGCGAUGAAucuGGCGgugCAUgucgGCg -3'
miRNA:   3'- aUGGCGCUGUUGUUU---CCGCa--GUGa---CG- -5'
30541 5' -52.1 NC_006548.1 + 7226 0.69 0.591108
Target:  5'- cUGCCGCGGCugcuuuGCAuAGcGCcGUgCGCUGCc -3'
miRNA:   3'- -AUGGCGCUGu-----UGUuUC-CG-CA-GUGACG- -5'
30541 5' -52.1 NC_006548.1 + 7274 0.76 0.249213
Target:  5'- aGCCGCGGCAGagcuGGGCcuGUCGCUGg -3'
miRNA:   3'- aUGGCGCUGUUguu-UCCG--CAGUGACg -5'
30541 5' -52.1 NC_006548.1 + 7780 0.68 0.649156
Target:  5'- -uCCGCGAgGACAAggaagcgcagGGGCG-C-CUGCu -3'
miRNA:   3'- auGGCGCUgUUGUU----------UCCGCaGuGACG- -5'
30541 5' -52.1 NC_006548.1 + 7940 0.67 0.695344
Target:  5'- cGCCGCcuGCAuCAuccGGCG-CGCUGCg -3'
miRNA:   3'- aUGGCGc-UGUuGUuu-CCGCaGUGACG- -5'
30541 5' -52.1 NC_006548.1 + 9341 0.68 0.637535
Target:  5'- cAUCGCGAUcuGGCAGGGGU---GCUGCg -3'
miRNA:   3'- aUGGCGCUG--UUGUUUCCGcagUGACG- -5'
30541 5' -52.1 NC_006548.1 + 11584 0.76 0.263126
Target:  5'- cGCgCGUGACGAUGAuguccGGGCGUC-CUGCa -3'
miRNA:   3'- aUG-GCGCUGUUGUU-----UCCGCAGuGACG- -5'
30541 5' -52.1 NC_006548.1 + 11742 0.7 0.5228
Target:  5'- gGCgCGCGGCGGCGccGGgGUUGCgGCg -3'
miRNA:   3'- aUG-GCGCUGUUGUuuCCgCAGUGaCG- -5'
30541 5' -52.1 NC_006548.1 + 13012 0.72 0.416865
Target:  5'- gGCCGCGc---CGAGGGUGaCGCUGCg -3'
miRNA:   3'- aUGGCGCuguuGUUUCCGCaGUGACG- -5'
30541 5' -52.1 NC_006548.1 + 14974 0.66 0.783576
Target:  5'- aGCCGUGAUGACcugcAGGCG-CGcCUGUu -3'
miRNA:   3'- aUGGCGCUGUUGuu--UCCGCaGU-GACG- -5'
30541 5' -52.1 NC_006548.1 + 15998 0.7 0.534003
Target:  5'- gGCUGCgGGCAACAuccGCuUCACUGCg -3'
miRNA:   3'- aUGGCG-CUGUUGUuucCGcAGUGACG- -5'
30541 5' -52.1 NC_006548.1 + 20055 0.66 0.762304
Target:  5'- gGCCGaUGACGAgcGGGGCcUCGCUGa -3'
miRNA:   3'- aUGGC-GCUGUUguUUCCGcAGUGACg -5'
30541 5' -52.1 NC_006548.1 + 20584 0.74 0.316787
Target:  5'- cGCaGCGGCGGCAGAGGCu--GCUGCg -3'
miRNA:   3'- aUGgCGCUGUUGUUUCCGcagUGACG- -5'
30541 5' -52.1 NC_006548.1 + 21058 0.67 0.729312
Target:  5'- cGCuCGCG-CuGCAAuGGCGUgagCACUGCc -3'
miRNA:   3'- aUG-GCGCuGuUGUUuCCGCA---GUGACG- -5'
30541 5' -52.1 NC_006548.1 + 21210 0.7 0.534003
Target:  5'- aUACgGCgGGCGGCGAuGGCGcCGCUGg -3'
miRNA:   3'- -AUGgCG-CUGUUGUUuCCGCaGUGACg -5'
30541 5' -52.1 NC_006548.1 + 23384 0.66 0.773021
Target:  5'- cACCGgGugGACcAGGGCcaUCGCUcGCu -3'
miRNA:   3'- aUGGCgCugUUGuUUCCGc-AGUGA-CG- -5'
30541 5' -52.1 NC_006548.1 + 23877 1.11 0.000854
Target:  5'- cUACCGCGACAACAAAGGCGUCACUGCa -3'
miRNA:   3'- -AUGGCGCUGUUGUUUCCGCAGUGACG- -5'
30541 5' -52.1 NC_006548.1 + 23908 0.68 0.649156
Target:  5'- aACCGCGACggUGAuGGCGaagugCACguuUGCc -3'
miRNA:   3'- aUGGCGCUGuuGUUuCCGCa----GUG---ACG- -5'
30541 5' -52.1 NC_006548.1 + 26303 0.69 0.57612
Target:  5'- cGCCGCGcgcuuuuacuaccuGCAGCAGAGcGCGUUcgGCgGCc -3'
miRNA:   3'- aUGGCGC--------------UGUUGUUUC-CGCAG--UGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.