miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30541 5' -52.1 NC_006548.1 + 36286 0.66 0.783576
Target:  5'- cGCgGCGGCAcugagcgauGCAGAucuGGCGcaGCUGCa -3'
miRNA:   3'- aUGgCGCUGU---------UGUUU---CCGCagUGACG- -5'
30541 5' -52.1 NC_006548.1 + 27237 0.68 0.660761
Target:  5'- cUGCCgagGCGGCAGCcAAGGCu--GCUGCu -3'
miRNA:   3'- -AUGG---CGCUGUUGuUUCCGcagUGACG- -5'
30541 5' -52.1 NC_006548.1 + 7940 0.67 0.695344
Target:  5'- cGCCGCcuGCAuCAuccGGCG-CGCUGCg -3'
miRNA:   3'- aUGGCGc-UGUuGUuu-CCGCaGUGACG- -5'
30541 5' -52.1 NC_006548.1 + 32940 0.67 0.729312
Target:  5'- gACCGCGuCGGCGAuucaacuGGCG-CGCccggUGCa -3'
miRNA:   3'- aUGGCGCuGUUGUUu------CCGCaGUG----ACG- -5'
30541 5' -52.1 NC_006548.1 + 29624 0.66 0.740436
Target:  5'- gGCCGCGAaugggcucGCAGGugcuGGUGcCGCUGCc -3'
miRNA:   3'- aUGGCGCUgu------UGUUU----CCGCaGUGACG- -5'
30541 5' -52.1 NC_006548.1 + 38284 0.66 0.762304
Target:  5'- gGCCGaUGGCGACAuAGuCGUC-CUGUg -3'
miRNA:   3'- aUGGC-GCUGUUGUuUCcGCAGuGACG- -5'
30541 5' -52.1 NC_006548.1 + 23384 0.66 0.773021
Target:  5'- cACCGgGugGACcAGGGCcaUCGCUcGCu -3'
miRNA:   3'- aUGGCgCugUUGuUUCCGc-AGUGA-CG- -5'
30541 5' -52.1 NC_006548.1 + 34236 0.66 0.773021
Target:  5'- gUugCGUGACGGCAAcaGCGUgACaggUGCa -3'
miRNA:   3'- -AugGCGCUGUUGUUucCGCAgUG---ACG- -5'
30541 5' -52.1 NC_006548.1 + 14974 0.66 0.783576
Target:  5'- aGCCGUGAUGACcugcAGGCG-CGcCUGUu -3'
miRNA:   3'- aUGGCGCUGUUGuu--UCCGCaGU-GACG- -5'
30541 5' -52.1 NC_006548.1 + 35511 0.68 0.649156
Target:  5'- gGCCGUGGCAaggaucGCGGccugcuggaccAGGCGUCAUaucGCa -3'
miRNA:   3'- aUGGCGCUGU------UGUU-----------UCCGCAGUGa--CG- -5'
30541 5' -52.1 NC_006548.1 + 9341 0.68 0.637535
Target:  5'- cAUCGCGAUcuGGCAGGGGU---GCUGCg -3'
miRNA:   3'- aUGGCGCUG--UUGUUUCCGcagUGACG- -5'
30541 5' -52.1 NC_006548.1 + 33301 0.69 0.614287
Target:  5'- gGCCGCGAgGAgCAu--GCGgCGCUGCg -3'
miRNA:   3'- aUGGCGCUgUU-GUuucCGCaGUGACG- -5'
30541 5' -52.1 NC_006548.1 + 11584 0.76 0.263126
Target:  5'- cGCgCGUGACGAUGAuguccGGGCGUC-CUGCa -3'
miRNA:   3'- aUG-GCGCUGUUGUU-----UCCGCAGuGACG- -5'
30541 5' -52.1 NC_006548.1 + 13012 0.72 0.416865
Target:  5'- gGCCGCGc---CGAGGGUGaCGCUGCg -3'
miRNA:   3'- aUGGCGCuguuGUUUCCGCaGUGACG- -5'
30541 5' -52.1 NC_006548.1 + 15998 0.7 0.534003
Target:  5'- gGCUGCgGGCAACAuccGCuUCACUGCg -3'
miRNA:   3'- aUGGCG-CUGUUGUuucCGcAGUGACG- -5'
30541 5' -52.1 NC_006548.1 + 28695 0.7 0.556653
Target:  5'- aGCgGCGACcuacGGCAAGGGCcggGCUGCg -3'
miRNA:   3'- aUGgCGCUG----UUGUUUCCGcagUGACG- -5'
30541 5' -52.1 NC_006548.1 + 29437 0.7 0.556653
Target:  5'- uUGCCGCG-CAGCAgcuggcccagAAGGCa--ACUGCg -3'
miRNA:   3'- -AUGGCGCuGUUGU----------UUCCGcagUGACG- -5'
30541 5' -52.1 NC_006548.1 + 26303 0.69 0.57612
Target:  5'- cGCCGCGcgcuuuuacuaccuGCAGCAGAGcGCGUUcgGCgGCc -3'
miRNA:   3'- aUGGCGC--------------UGUUGUUUC-CGCAG--UGaCG- -5'
30541 5' -52.1 NC_006548.1 + 7226 0.69 0.591108
Target:  5'- cUGCCGCGGCugcuuuGCAuAGcGCcGUgCGCUGCc -3'
miRNA:   3'- -AUGGCGCUGu-----UGUuUC-CG-CA-GUGACG- -5'
30541 5' -52.1 NC_006548.1 + 27775 0.69 0.614287
Target:  5'- -cCUGCGcACGAucuuCGAAGGCGUCGCcucgGCc -3'
miRNA:   3'- auGGCGC-UGUU----GUUUCCGCAGUGa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.