Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30545 | 3' | -60 | NC_006548.1 | + | 25454 | 1.09 | 0.000222 |
Target: 5'- cGCCACAGAUCGCGCCGAGGCACGCCUc -3' miRNA: 3'- -CGGUGUCUAGCGCGGCUCCGUGCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 35934 | 0.86 | 0.012284 |
Target: 5'- gGCCgcGCGGAUCGCGCCGgcauucuucgcacGGGCACGCCg -3' miRNA: 3'- -CGG--UGUCUAGCGCGGC-------------UCCGUGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 1444 | 0.79 | 0.042404 |
Target: 5'- uGCCGCuuuacgucAGcAUCGCGCCGAGGCGgauCGCCg -3' miRNA: 3'- -CGGUG--------UC-UAGCGCGGCUCCGU---GCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 32367 | 0.74 | 0.106333 |
Target: 5'- uGUCGCAGAUCGaucgcgaggaCGCCGAuGGCAUcaGCCUg -3' miRNA: 3'- -CGGUGUCUAGC----------GCGGCU-CCGUG--CGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 13005 | 0.74 | 0.11248 |
Target: 5'- cGCCACcGGcCGCGCCGAGGgugACGCUg -3' miRNA: 3'- -CGGUGuCUaGCGCGGCUCCg--UGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 33858 | 0.73 | 0.129331 |
Target: 5'- uCCAgCGGAUCGgGCCGAGGCGgaaGUCg -3' miRNA: 3'- cGGU-GUCUAGCgCGGCUCCGUg--CGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 18717 | 0.72 | 0.136703 |
Target: 5'- uGCCGCAGAuccUCGCccaGCCGcAGGCcgugcugcucgACGCCa -3' miRNA: 3'- -CGGUGUCU---AGCG---CGGC-UCCG-----------UGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 36088 | 0.72 | 0.14446 |
Target: 5'- cGCCAgGGuUCaGCGCauAGGCGCGCCg -3' miRNA: 3'- -CGGUgUCuAG-CGCGgcUCCGUGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 19215 | 0.72 | 0.152617 |
Target: 5'- gGCC-CAGGuaUCGC-CUGAcGGCACGCCUu -3' miRNA: 3'- -CGGuGUCU--AGCGcGGCU-CCGUGCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 23878 | 0.71 | 0.174863 |
Target: 5'- uGCCAucugcCGGGUCGCGCCaccGGCAUgGCCg -3' miRNA: 3'- -CGGU-----GUCUAGCGCGGcu-CCGUG-CGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 17833 | 0.71 | 0.179645 |
Target: 5'- cGCCACGGAUCGCGUuguagucaauCGAcGGaugcUugGCCUg -3' miRNA: 3'- -CGGUGUCUAGCGCG----------GCU-CC----GugCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 28612 | 0.71 | 0.179645 |
Target: 5'- aGUCGCGGGUaGCGCCGcgaccuGGCcgGCGCCg -3' miRNA: 3'- -CGGUGUCUAgCGCGGCu-----CCG--UGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 13320 | 0.71 | 0.179645 |
Target: 5'- cGCCGCAGGagcgCGCGCCGAuuC-CGCCg -3' miRNA: 3'- -CGGUGUCUa---GCGCGGCUccGuGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 11678 | 0.7 | 0.194694 |
Target: 5'- cGCCGCAaccccgGCGCCGccGCGCGCCg -3' miRNA: 3'- -CGGUGUcuag--CGCGGCucCGUGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 5310 | 0.7 | 0.19942 |
Target: 5'- aGCCuCGGcguuggCGCGCCGGGGCuccacuucuucaaAUGCCUg -3' miRNA: 3'- -CGGuGUCua----GCGCGGCUCCG-------------UGCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 22779 | 0.7 | 0.199951 |
Target: 5'- cGCCuuuGCGGAUCGCcgaCGAGGCcggGCGCUa -3' miRNA: 3'- -CGG---UGUCUAGCGcg-GCUCCG---UGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 9407 | 0.7 | 0.20533 |
Target: 5'- uGCCGCagcaccccugccAGAUCGCGauGGGGCAuuUGCCa -3' miRNA: 3'- -CGGUG------------UCUAGCGCggCUCCGU--GCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 35558 | 0.7 | 0.20533 |
Target: 5'- gGCCGCAGAUaCGUuguucGCCGAGGgcuUugGUCUg -3' miRNA: 3'- -CGGUGUCUA-GCG-----CGGCUCC---GugCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 33033 | 0.7 | 0.210279 |
Target: 5'- aGCCGgcCGGccaGCGCCGcugcaccGGGCGCGCCa -3' miRNA: 3'- -CGGU--GUCuagCGCGGC-------UCCGUGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 34347 | 0.69 | 0.222225 |
Target: 5'- cGCCGCGGAaccagGCGuuGGGGUAucCGCCa -3' miRNA: 3'- -CGGUGUCUag---CGCggCUCCGU--GCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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