Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30545 | 3' | -60 | NC_006548.1 | + | 29350 | 0.69 | 0.253 |
Target: 5'- cGCUGCGcGGUCuCGCCGAuGGCAC-CCUg -3' miRNA: 3'- -CGGUGU-CUAGcGCGGCU-CCGUGcGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 11678 | 0.7 | 0.194694 |
Target: 5'- cGCCGCAaccccgGCGCCGccGCGCGCCg -3' miRNA: 3'- -CGGUGUcuag--CGCGGCucCGUGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 5310 | 0.7 | 0.19942 |
Target: 5'- aGCCuCGGcguuggCGCGCCGGGGCuccacuucuucaaAUGCCUg -3' miRNA: 3'- -CGGuGUCua----GCGCGGCUCCG-------------UGCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 19215 | 0.72 | 0.152617 |
Target: 5'- gGCC-CAGGuaUCGC-CUGAcGGCACGCCUu -3' miRNA: 3'- -CGGuGUCU--AGCGcGGCU-CCGUGCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 13320 | 0.71 | 0.179645 |
Target: 5'- cGCCGCAGGagcgCGCGCCGAuuC-CGCCg -3' miRNA: 3'- -CGGUGUCUa---GCGCGGCUccGuGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 18717 | 0.72 | 0.136703 |
Target: 5'- uGCCGCAGAuccUCGCccaGCCGcAGGCcgugcugcucgACGCCa -3' miRNA: 3'- -CGGUGUCU---AGCG---CGGC-UCCG-----------UGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 13005 | 0.74 | 0.11248 |
Target: 5'- cGCCACcGGcCGCGCCGAGGgugACGCUg -3' miRNA: 3'- -CGGUGuCUaGCGCGGCUCCg--UGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 32367 | 0.74 | 0.106333 |
Target: 5'- uGUCGCAGAUCGaucgcgaggaCGCCGAuGGCAUcaGCCUg -3' miRNA: 3'- -CGGUGUCUAGC----------GCGGCU-CCGUG--CGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 35558 | 0.7 | 0.20533 |
Target: 5'- gGCCGCAGAUaCGUuguucGCCGAGGgcuUugGUCUg -3' miRNA: 3'- -CGGUGUCUA-GCG-----CGGCUCC---GugCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 22779 | 0.7 | 0.199951 |
Target: 5'- cGCCuuuGCGGAUCGCcgaCGAGGCcggGCGCUa -3' miRNA: 3'- -CGG---UGUCUAGCGcg-GCUCCG---UGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 1444 | 0.79 | 0.042404 |
Target: 5'- uGCCGCuuuacgucAGcAUCGCGCCGAGGCGgauCGCCg -3' miRNA: 3'- -CGGUG--------UC-UAGCGCGGCUCCGU---GCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 22644 | 0.68 | 0.280077 |
Target: 5'- uGCgGCAGAUCgGUGCCGAucuggagauccaGG-ACGCCg -3' miRNA: 3'- -CGgUGUCUAG-CGCGGCU------------CCgUGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 33110 | 0.68 | 0.285045 |
Target: 5'- gGCCGgAGGUCaUGCCcucgacaacauaccGGGGCugGCCg -3' miRNA: 3'- -CGGUgUCUAGcGCGG--------------CUCCGugCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 12520 | 0.67 | 0.30186 |
Target: 5'- gGCCuCGGcAUCcgGCGCCGAccaGCugGCCUg -3' miRNA: 3'- -CGGuGUC-UAG--CGCGGCUc--CGugCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 29390 | 0.67 | 0.304862 |
Target: 5'- gGCCGCGGuAUCGUuccugcaggcggucaGCCGAucGCugGCCg -3' miRNA: 3'- -CGGUGUC-UAGCG---------------CGGCUc-CGugCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 30761 | 0.66 | 0.349279 |
Target: 5'- uCCGC-GAUCcCGCCGGGcGCugGCUc -3' miRNA: 3'- cGGUGuCUAGcGCGGCUC-CGugCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 30229 | 0.66 | 0.35768 |
Target: 5'- aCCGCGaacccagaccuGGUCGCGgCuGGGCAgGCCUa -3' miRNA: 3'- cGGUGU-----------CUAGCGCgGcUCCGUgCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 13612 | 0.66 | 0.369678 |
Target: 5'- aGCCugGauUCGCGauucgcaagccaagaCC-AGGCACGCCUg -3' miRNA: 3'- -CGGugUcuAGCGC---------------GGcUCCGUGCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 36003 | 0.66 | 0.39268 |
Target: 5'- aGCUcCAGGUgCG-GCuCGAucGGCGCGCCUa -3' miRNA: 3'- -CGGuGUCUA-GCgCG-GCU--CCGUGCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 25454 | 1.09 | 0.000222 |
Target: 5'- cGCCACAGAUCGCGCCGAGGCACGCCUc -3' miRNA: 3'- -CGGUGUCUAGCGCGGCUCCGUGCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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