Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30545 | 3' | -60 | NC_006548.1 | + | 1444 | 0.79 | 0.042404 |
Target: 5'- uGCCGCuuuacgucAGcAUCGCGCCGAGGCGgauCGCCg -3' miRNA: 3'- -CGGUG--------UC-UAGCGCGGCUCCGU---GCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 2537 | 0.67 | 0.324927 |
Target: 5'- gGCCG-AGAUCGCGCUGcGuCAUGCCc -3' miRNA: 3'- -CGGUgUCUAGCGCGGCuCcGUGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 4953 | 0.68 | 0.287196 |
Target: 5'- cGCCACuGGAgcggccgaaaUCGaGCCcgGAGGCACGCUUc -3' miRNA: 3'- -CGGUG-UCU----------AGCgCGG--CUCCGUGCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 5310 | 0.7 | 0.19942 |
Target: 5'- aGCCuCGGcguuggCGCGCCGGGGCuccacuucuucaaAUGCCUg -3' miRNA: 3'- -CGGuGUCua----GCGCGGCUCCG-------------UGCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 7320 | 0.67 | 0.324927 |
Target: 5'- aGCUACAGA--GCGCCGgucagGGGCAgCGCa- -3' miRNA: 3'- -CGGUGUCUagCGCGGC-----UCCGU-GCGga -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 8712 | 0.67 | 0.309406 |
Target: 5'- aCCuuGGA-CGCGCUGcGGGCGgGCCUg -3' miRNA: 3'- cGGugUCUaGCGCGGC-UCCGUgCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 9407 | 0.7 | 0.20533 |
Target: 5'- uGCCGCagcaccccugccAGAUCGCGauGGGGCAuuUGCCa -3' miRNA: 3'- -CGGUG------------UCUAGCGCggCUCCGU--GCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 11678 | 0.7 | 0.194694 |
Target: 5'- cGCCGCAaccccgGCGCCGccGCGCGCCg -3' miRNA: 3'- -CGGUGUcuag--CGCGGCucCGUGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 12520 | 0.67 | 0.30186 |
Target: 5'- gGCCuCGGcAUCcgGCGCCGAccaGCugGCCUg -3' miRNA: 3'- -CGGuGUC-UAG--CGCGGCUc--CGugCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 13005 | 0.74 | 0.11248 |
Target: 5'- cGCCACcGGcCGCGCCGAGGgugACGCUg -3' miRNA: 3'- -CGGUGuCUaGCGCGGCUCCg--UGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 13320 | 0.71 | 0.179645 |
Target: 5'- cGCCGCAGGagcgCGCGCCGAuuC-CGCCg -3' miRNA: 3'- -CGGUGUCUa---GCGCGGCUccGuGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 13612 | 0.66 | 0.369678 |
Target: 5'- aGCCugGauUCGCGauucgcaagccaagaCC-AGGCACGCCUg -3' miRNA: 3'- -CGGugUcuAGCGC---------------GGcUCCGUGCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 13972 | 0.69 | 0.246577 |
Target: 5'- aGCCagcGCAGGgcuUCGCGCCGGGucUugGCCa -3' miRNA: 3'- -CGG---UGUCU---AGCGCGGCUCc-GugCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 14082 | 0.66 | 0.39268 |
Target: 5'- cGCgGCGGAUCuccagcggugugGCGUCGGGGUAcuCGCUc -3' miRNA: 3'- -CGgUGUCUAG------------CGCGGCUCCGU--GCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 14503 | 0.67 | 0.309406 |
Target: 5'- cGUC-CAGGUCGuCGCCGccuGGGCACGg-- -3' miRNA: 3'- -CGGuGUCUAGC-GCGGC---UCCGUGCgga -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 16402 | 0.67 | 0.309406 |
Target: 5'- cCCGCAGGUCGuUGCCGccacGGCGCuGCa- -3' miRNA: 3'- cGGUGUCUAGC-GCGGCu---CCGUG-CGga -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 17833 | 0.71 | 0.179645 |
Target: 5'- cGCCACGGAUCGCGUuguagucaauCGAcGGaugcUugGCCUg -3' miRNA: 3'- -CGGUGUCUAGCGCG----------GCU-CC----GugCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 18717 | 0.72 | 0.136703 |
Target: 5'- uGCCGCAGAuccUCGCccaGCCGcAGGCcgugcugcucgACGCCa -3' miRNA: 3'- -CGGUGUCU---AGCG---CGGC-UCCG-----------UGCGGa -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 19215 | 0.72 | 0.152617 |
Target: 5'- gGCC-CAGGuaUCGC-CUGAcGGCACGCCUu -3' miRNA: 3'- -CGGuGUCU--AGCGcGGCU-CCGUGCGGA- -5' |
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30545 | 3' | -60 | NC_006548.1 | + | 21202 | 0.68 | 0.287196 |
Target: 5'- gGCgGC-GAUgGCGCCGcuGGCACGUUUg -3' miRNA: 3'- -CGgUGuCUAgCGCGGCu-CCGUGCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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