miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
30548	5'	-61.1	NC_006548.1	+	35940	0.66	0.284385
	Target:  5'- gCCGCCGGcCGcGCGGAuCGcGCCgGCAUu -3' miRNA:   3'- aGGCGGCUaGU-CGUCU-GC-CGGgCGUA- -5'
30548	5'	-61.1	NC_006548.1	+	21163	0.66	0.289421
	Target:  5'- cCCGCCGuaucgugauccauggCAGCucGGACGGCCUGg-- -3' miRNA:   3'- aGGCGGCua-------------GUCG--UCUGCCGGGCgua -5'
30548	5'	-61.1	NC_006548.1	+	36175	0.66	0.2916
	Target:  5'- aCUGCCGG-CAGCcgGGACG-UCCGCAg -3' miRNA:   3'- aGGCGGCUaGUCG--UCUGCcGGGCGUa -5'
30548	5'	-61.1	NC_006548.1	+	8879	0.66	0.2916
	Target:  5'- uUCCGCUGAUCAcacGCuaccuGGCGG-CCGCc- -3' miRNA:   3'- -AGGCGGCUAGU---CGu----CUGCCgGGCGua -5'
30548	5'	-61.1	NC_006548.1	+	36569	0.66	0.305702
	Target:  5'- uUCCGCgucgacgCGAUCAacgccGCGGcCGGCaCCGCGg -3' miRNA:   3'- -AGGCG-------GCUAGU-----CGUCuGCCG-GGCGUa -5'
30548	5'	-61.1	NC_006548.1	+	29186	0.66	0.305702
	Target:  5'- gCUGCCGcgCGGCcaguucgcugacgAGAcCGGCCUGCu- -3' miRNA:   3'- aGGCGGCuaGUCG-------------UCU-GCCGGGCGua -5'
30548	5'	-61.1	NC_006548.1	+	18796	0.66	0.32189
	Target:  5'- -gCGUCGAgCAGC--ACGGCCUGCGg -3' miRNA:   3'- agGCGGCUaGUCGucUGCCGGGCGUa -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home