miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30553 5' -57.7 NC_006548.1 + 14464 0.66 0.436256
Target:  5'- cGCCucggUGCuGGCaCGAAUUgccgcCAGCCGCCg- -3'
miRNA:   3'- -CGG----ACGuCCG-GCUUGA-----GUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 28754 0.66 0.436256
Target:  5'- aUCUGaCAGGagcccuggaagcCCGuGCUCGcGCCGCCUGg -3'
miRNA:   3'- cGGAC-GUCC------------GGCuUGAGU-UGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 29155 0.66 0.456154
Target:  5'- gGCCUGCugggcGGCCuGGauACUCGACU-CCUGc -3'
miRNA:   3'- -CGGACGu----CCGG-CU--UGAGUUGGcGGAC- -5'
30553 5' -57.7 NC_006548.1 + 36916 0.66 0.436256
Target:  5'- -gCUGCAGGCCGucAACUgguUGACuCGUCUGc -3'
miRNA:   3'- cgGACGUCCGGC--UUGA---GUUG-GCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 25845 0.66 0.456154
Target:  5'- aCgUGCGauguGGCgGAugUC-ACCGCCUGc -3'
miRNA:   3'- cGgACGU----CCGgCUugAGuUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 7416 0.66 0.466284
Target:  5'- aGCuCUGCAGGCagguCGAACUCGuugcguACCuCCUc -3'
miRNA:   3'- -CG-GACGUCCG----GCUUGAGU------UGGcGGAc -5'
30553 5' -57.7 NC_006548.1 + 7520 0.66 0.466284
Target:  5'- gGCCUGCucGGCC-AACUUGGCgaaGCCUu -3'
miRNA:   3'- -CGGACGu-CCGGcUUGAGUUGg--CGGAc -5'
30553 5' -57.7 NC_006548.1 + 29404 0.66 0.466284
Target:  5'- uCCUGCAGGCgGucAGC-CGAUCGCUg- -3'
miRNA:   3'- cGGACGUCCGgC--UUGaGUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 7280 0.66 0.47653
Target:  5'- -gCUGCcGGUCGAGgUCAACCagGCgCUGg -3'
miRNA:   3'- cgGACGuCCGGCUUgAGUUGG--CG-GAC- -5'
30553 5' -57.7 NC_006548.1 + 20779 0.66 0.47653
Target:  5'- gGCCUGgucaAGGCCG------GCCGCCUGc -3'
miRNA:   3'- -CGGACg---UCCGGCuugaguUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 16409 0.66 0.47653
Target:  5'- gGCCagcgGCAauuGGCCGuAgUCAGCCGCgaGu -3'
miRNA:   3'- -CGGa---CGU---CCGGCuUgAGUUGGCGgaC- -5'
30553 5' -57.7 NC_006548.1 + 18034 0.66 0.486886
Target:  5'- -gCUGCAGGCggucaaGGGCgagCGACCGuUCUGg -3'
miRNA:   3'- cgGACGUCCGg-----CUUGa--GUUGGC-GGAC- -5'
30553 5' -57.7 NC_006548.1 + 23967 0.66 0.486886
Target:  5'- gGCCUGgCAGGC---GCUCGcgACUGCCa- -3'
miRNA:   3'- -CGGAC-GUCCGgcuUGAGU--UGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 5472 0.66 0.486886
Target:  5'- cGCCggGCucAGGUCGAccGCUCgAGCCaggucgGCCUGg -3'
miRNA:   3'- -CGGa-CG--UCCGGCU--UGAG-UUGG------CGGAC- -5'
30553 5' -57.7 NC_006548.1 + 7569 0.66 0.446143
Target:  5'- gGCCgaGCAGGCCGAggagcaagguGC-CGACCaucgcGCCUu -3'
miRNA:   3'- -CGGa-CGUCCGGCU----------UGaGUUGG-----CGGAc -5'
30553 5' -57.7 NC_006548.1 + 32796 0.66 0.446143
Target:  5'- aGCCUGCaAGGCUGAGgUCGaggaGCaCGCgCUc -3'
miRNA:   3'- -CGGACG-UCCGGCUUgAGU----UG-GCG-GAc -5'
30553 5' -57.7 NC_006548.1 + 25818 0.66 0.486886
Target:  5'- gGCCUugGCuGGGCUGGcACUgGGuuGCCUGu -3'
miRNA:   3'- -CGGA--CG-UCCGGCU-UGAgUUggCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 476 0.67 0.426496
Target:  5'- aGCgaGCuGGCCGAACU-GAUCGUCg- -3'
miRNA:   3'- -CGgaCGuCCGGCUUGAgUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 29452 0.67 0.388796
Target:  5'- cGCCUGCAGGaaCGAuACcgCGGCCuCCUGc -3'
miRNA:   3'- -CGGACGUCCg-GCU-UGa-GUUGGcGGAC- -5'
30553 5' -57.7 NC_006548.1 + 15242 0.67 0.42456
Target:  5'- --gUGCAGGgCGAACUCGuccaggaugcguCCGCCg- -3'
miRNA:   3'- cggACGUCCgGCUUGAGUu-----------GGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.