miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30553 5' -57.7 NC_006548.1 + 476 0.67 0.426496
Target:  5'- aGCgaGCuGGCCGAACU-GAUCGUCg- -3'
miRNA:   3'- -CGgaCGuCCGGCUUGAgUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 965 0.72 0.181411
Target:  5'- aCCUGCgccAGGCUGAGCaguugcugacugaguUCAAgCGCCUGg -3'
miRNA:   3'- cGGACG---UCCGGCUUG---------------AGUUgGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 1035 0.68 0.361992
Target:  5'- gGCCUGCAGGaCGAugUCuAUCGgCa- -3'
miRNA:   3'- -CGGACGUCCgGCUugAGuUGGCgGac -5'
30553 5' -57.7 NC_006548.1 + 4882 0.68 0.353348
Target:  5'- uGCCUcCGGGCuCGAuUUCGGCCGCUc- -3'
miRNA:   3'- -CGGAcGUCCG-GCUuGAGUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 5472 0.66 0.486886
Target:  5'- cGCCggGCucAGGUCGAccGCUCgAGCCaggucgGCCUGg -3'
miRNA:   3'- -CGGa-CG--UCCGGCU--UGAG-UUGG------CGGAC- -5'
30553 5' -57.7 NC_006548.1 + 5724 0.68 0.336501
Target:  5'- aGCCUGgAccaCGGACUCGAUgGCCUGg -3'
miRNA:   3'- -CGGACgUccgGCUUGAGUUGgCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 7280 0.66 0.47653
Target:  5'- -gCUGCcGGUCGAGgUCAACCagGCgCUGg -3'
miRNA:   3'- cgGACGuCCGGCUUgAGUUGG--CG-GAC- -5'
30553 5' -57.7 NC_006548.1 + 7416 0.66 0.466284
Target:  5'- aGCuCUGCAGGCagguCGAACUCGuugcguACCuCCUc -3'
miRNA:   3'- -CG-GACGUCCG----GCUUGAGU------UGGcGGAc -5'
30553 5' -57.7 NC_006548.1 + 7520 0.66 0.466284
Target:  5'- gGCCUGCucGGCC-AACUUGGCgaaGCCUu -3'
miRNA:   3'- -CGGACGu-CCGGcUUGAGUUGg--CGGAc -5'
30553 5' -57.7 NC_006548.1 + 7569 0.66 0.446143
Target:  5'- gGCCgaGCAGGCCGAggagcaagguGC-CGACCaucgcGCCUu -3'
miRNA:   3'- -CGGa-CGUCCGGCU----------UGaGUUGG-----CGGAc -5'
30553 5' -57.7 NC_006548.1 + 9245 0.68 0.336501
Target:  5'- cGCCUGUcgauugaucacGGGCUGGAuCUgGACgGCCUa -3'
miRNA:   3'- -CGGACG-----------UCCGGCUU-GAgUUGgCGGAc -5'
30553 5' -57.7 NC_006548.1 + 13566 0.7 0.282215
Target:  5'- uGCCUGCGcGGgCGGcggcaagcugcuGCUCAACCagauccagaaaaGCCUGg -3'
miRNA:   3'- -CGGACGU-CCgGCU------------UGAGUUGG------------CGGAC- -5'
30553 5' -57.7 NC_006548.1 + 14353 0.69 0.289525
Target:  5'- cGCCUGCAGGuCCGcgaUCAGCuCGUCc- -3'
miRNA:   3'- -CGGACGUCC-GGCuugAGUUG-GCGGac -5'
30553 5' -57.7 NC_006548.1 + 14464 0.66 0.436256
Target:  5'- cGCCucggUGCuGGCaCGAAUUgccgcCAGCCGCCg- -3'
miRNA:   3'- -CGG----ACGuCCG-GCUUGA-----GUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 15242 0.67 0.42456
Target:  5'- --gUGCAGGgCGAACUCGuccaggaugcguCCGCCg- -3'
miRNA:   3'- cggACGUCCgGCUUGAGUu-----------GGCGGac -5'
30553 5' -57.7 NC_006548.1 + 15401 0.67 0.388796
Target:  5'- cGUgUGCAGGCUGAuAUUCuucggauuGCCGCCc- -3'
miRNA:   3'- -CGgACGUCCGGCU-UGAGu-------UGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 15671 0.68 0.352492
Target:  5'- cGCCUGCGaacagucGGCCGccCUCGggcuGCUGCCa- -3'
miRNA:   3'- -CGGACGU-------CCGGCuuGAGU----UGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 16409 0.66 0.47653
Target:  5'- gGCCagcgGCAauuGGCCGuAgUCAGCCGCgaGu -3'
miRNA:   3'- -CGGa---CGU---CCGGCuUgAGUUGGCGgaC- -5'
30553 5' -57.7 NC_006548.1 + 17126 0.7 0.282215
Target:  5'- aUUUGCAGGCCGAugUUcGCCuugaCCUGg -3'
miRNA:   3'- cGGACGUCCGGCUugAGuUGGc---GGAC- -5'
30553 5' -57.7 NC_006548.1 + 18034 0.66 0.486886
Target:  5'- -gCUGCAGGCggucaaGGGCgagCGACCGuUCUGg -3'
miRNA:   3'- cgGACGUCCGg-----CUUGa--GUUGGC-GGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.