miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30553 5' -57.7 NC_006548.1 + 18735 0.73 0.156221
Target:  5'- aGCC-GCAGGCCGugcuGCUCGAC-GCCa- -3'
miRNA:   3'- -CGGaCGUCCGGCu---UGAGUUGgCGGac -5'
30553 5' -57.7 NC_006548.1 + 18986 0.68 0.344851
Target:  5'- cGCCaUGUAGGCCcccgagccgGAACUggcgauuuccCGGCCGCCa- -3'
miRNA:   3'- -CGG-ACGUCCGG---------CUUGA----------GUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 20779 0.66 0.47653
Target:  5'- gGCCUGgucaAGGCCG------GCCGCCUGc -3'
miRNA:   3'- -CGGACg---UCCGGCuugaguUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 21361 0.68 0.336501
Target:  5'- gGCgaGCGGuuGCCGcGACUCuGCCGCCg- -3'
miRNA:   3'- -CGgaCGUC--CGGC-UUGAGuUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 22200 0.73 0.156657
Target:  5'- cGCCUGgGGGCCGcacGCgucuuucaucuaccgCGAUCGCCUGg -3'
miRNA:   3'- -CGGACgUCCGGCu--UGa--------------GUUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 22222 0.69 0.304589
Target:  5'- uUCUGCcccGGCCGAGCgauguUCAGCCGCgCUu -3'
miRNA:   3'- cGGACGu--CCGGCUUG-----AGUUGGCG-GAc -5'
30553 5' -57.7 NC_006548.1 + 22760 0.67 0.416867
Target:  5'- cGCCUGaauGGCagCGAcgagcuGCUCGAUCGCCa- -3'
miRNA:   3'- -CGGACgu-CCG--GCU------UGAGUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 23230 0.68 0.370783
Target:  5'- cGCUUGgagAGGCCGAGgUgUAGCCGCUUGc -3'
miRNA:   3'- -CGGACg--UCCGGCUUgA-GUUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 23967 0.66 0.486886
Target:  5'- gGCCUGgCAGGC---GCUCGcgACUGCCa- -3'
miRNA:   3'- -CGGAC-GUCCGgcuUGAGU--UGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 24017 0.73 0.164702
Target:  5'- cGCCUGcCAGGCCGGGCggugucCAGCCgaucaggGCCUu -3'
miRNA:   3'- -CGGAC-GUCCGGCUUGa-----GUUGG-------CGGAc -5'
30553 5' -57.7 NC_006548.1 + 24446 0.7 0.282215
Target:  5'- cGCCUGCAauauGGCCGcuugcagcgcGGCaaGACCGCCa- -3'
miRNA:   3'- -CGGACGU----CCGGC----------UUGagUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 25126 0.69 0.296231
Target:  5'- gGCCgggGCGGGCUGGgucuugcGCUCAACCuugcGCCc- -3'
miRNA:   3'- -CGGa--CGUCCGGCU-------UGAGUUGG----CGGac -5'
30553 5' -57.7 NC_006548.1 + 25419 0.68 0.370783
Target:  5'- gGCCgugcgcGCAGGCCcuucucGAuccauuccaGCUCGacaucuGCCGCCUGg -3'
miRNA:   3'- -CGGa-----CGUCCGG------CU---------UGAGU------UGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 25818 0.66 0.486886
Target:  5'- gGCCUugGCuGGGCUGGcACUgGGuuGCCUGu -3'
miRNA:   3'- -CGGA--CG-UCCGGCU-UGAgUUggCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 25845 0.66 0.456154
Target:  5'- aCgUGCGauguGGCgGAugUC-ACCGCCUGc -3'
miRNA:   3'- cGgACGU----CCGgCUugAGuUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 27285 0.68 0.353348
Target:  5'- cGCCUcgGCAGcGCguuGCUCGgucGCCGCCUGc -3'
miRNA:   3'- -CGGA--CGUC-CGgcuUGAGU---UGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 28087 1.09 0.000334
Target:  5'- gGCCUGCAGGCCGAACUCAACCGCCUGc -3'
miRNA:   3'- -CGGACGUCCGGCUUGAGUUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 28090 0.74 0.139648
Target:  5'- uCCUGCAGggccgcGCCGAaccgcggcagaaACUCGGCCGCCg- -3'
miRNA:   3'- cGGACGUC------CGGCU------------UGAGUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 28136 0.87 0.01573
Target:  5'- gGCCUGCAGGCCGc---CAGCCGCCUGc -3'
miRNA:   3'- -CGGACGUCCGGCuugaGUUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 28754 0.66 0.436256
Target:  5'- aUCUGaCAGGagcccuggaagcCCGuGCUCGcGCCGCCUGg -3'
miRNA:   3'- cGGAC-GUCC------------GGCuUGAGU-UGGCGGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.