Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30553 | 5' | -57.7 | NC_006548.1 | + | 18735 | 0.73 | 0.156221 |
Target: 5'- aGCC-GCAGGCCGugcuGCUCGAC-GCCa- -3' miRNA: 3'- -CGGaCGUCCGGCu---UGAGUUGgCGGac -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 18986 | 0.68 | 0.344851 |
Target: 5'- cGCCaUGUAGGCCcccgagccgGAACUggcgauuuccCGGCCGCCa- -3' miRNA: 3'- -CGG-ACGUCCGG---------CUUGA----------GUUGGCGGac -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 20779 | 0.66 | 0.47653 |
Target: 5'- gGCCUGgucaAGGCCG------GCCGCCUGc -3' miRNA: 3'- -CGGACg---UCCGGCuugaguUGGCGGAC- -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 21361 | 0.68 | 0.336501 |
Target: 5'- gGCgaGCGGuuGCCGcGACUCuGCCGCCg- -3' miRNA: 3'- -CGgaCGUC--CGGC-UUGAGuUGGCGGac -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 22200 | 0.73 | 0.156657 |
Target: 5'- cGCCUGgGGGCCGcacGCgucuuucaucuaccgCGAUCGCCUGg -3' miRNA: 3'- -CGGACgUCCGGCu--UGa--------------GUUGGCGGAC- -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 22222 | 0.69 | 0.304589 |
Target: 5'- uUCUGCcccGGCCGAGCgauguUCAGCCGCgCUu -3' miRNA: 3'- cGGACGu--CCGGCUUG-----AGUUGGCG-GAc -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 22760 | 0.67 | 0.416867 |
Target: 5'- cGCCUGaauGGCagCGAcgagcuGCUCGAUCGCCa- -3' miRNA: 3'- -CGGACgu-CCG--GCU------UGAGUUGGCGGac -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 23230 | 0.68 | 0.370783 |
Target: 5'- cGCUUGgagAGGCCGAGgUgUAGCCGCUUGc -3' miRNA: 3'- -CGGACg--UCCGGCUUgA-GUUGGCGGAC- -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 23967 | 0.66 | 0.486886 |
Target: 5'- gGCCUGgCAGGC---GCUCGcgACUGCCa- -3' miRNA: 3'- -CGGAC-GUCCGgcuUGAGU--UGGCGGac -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 24017 | 0.73 | 0.164702 |
Target: 5'- cGCCUGcCAGGCCGGGCggugucCAGCCgaucaggGCCUu -3' miRNA: 3'- -CGGAC-GUCCGGCUUGa-----GUUGG-------CGGAc -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 24446 | 0.7 | 0.282215 |
Target: 5'- cGCCUGCAauauGGCCGcuugcagcgcGGCaaGACCGCCa- -3' miRNA: 3'- -CGGACGU----CCGGC----------UUGagUUGGCGGac -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 25126 | 0.69 | 0.296231 |
Target: 5'- gGCCgggGCGGGCUGGgucuugcGCUCAACCuugcGCCc- -3' miRNA: 3'- -CGGa--CGUCCGGCU-------UGAGUUGG----CGGac -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 25419 | 0.68 | 0.370783 |
Target: 5'- gGCCgugcgcGCAGGCCcuucucGAuccauuccaGCUCGacaucuGCCGCCUGg -3' miRNA: 3'- -CGGa-----CGUCCGG------CU---------UGAGU------UGGCGGAC- -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 25818 | 0.66 | 0.486886 |
Target: 5'- gGCCUugGCuGGGCUGGcACUgGGuuGCCUGu -3' miRNA: 3'- -CGGA--CG-UCCGGCU-UGAgUUggCGGAC- -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 25845 | 0.66 | 0.456154 |
Target: 5'- aCgUGCGauguGGCgGAugUC-ACCGCCUGc -3' miRNA: 3'- cGgACGU----CCGgCUugAGuUGGCGGAC- -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 27285 | 0.68 | 0.353348 |
Target: 5'- cGCCUcgGCAGcGCguuGCUCGgucGCCGCCUGc -3' miRNA: 3'- -CGGA--CGUC-CGgcuUGAGU---UGGCGGAC- -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 28087 | 1.09 | 0.000334 |
Target: 5'- gGCCUGCAGGCCGAACUCAACCGCCUGc -3' miRNA: 3'- -CGGACGUCCGGCUUGAGUUGGCGGAC- -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 28090 | 0.74 | 0.139648 |
Target: 5'- uCCUGCAGggccgcGCCGAaccgcggcagaaACUCGGCCGCCg- -3' miRNA: 3'- cGGACGUC------CGGCU------------UGAGUUGGCGGac -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 28136 | 0.87 | 0.01573 |
Target: 5'- gGCCUGCAGGCCGc---CAGCCGCCUGc -3' miRNA: 3'- -CGGACGUCCGGCuugaGUUGGCGGAC- -5' |
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30553 | 5' | -57.7 | NC_006548.1 | + | 28754 | 0.66 | 0.436256 |
Target: 5'- aUCUGaCAGGagcccuggaagcCCGuGCUCGcGCCGCCUGg -3' miRNA: 3'- cGGAC-GUCC------------GGCuUGAGU-UGGCGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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