miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30553 5' -57.7 NC_006548.1 + 24017 0.73 0.164702
Target:  5'- cGCCUGcCAGGCCGGGCggugucCAGCCgaucaggGCCUu -3'
miRNA:   3'- -CGGAC-GUCCGGCUUGa-----GUUGG-------CGGAc -5'
30553 5' -57.7 NC_006548.1 + 23967 0.66 0.486886
Target:  5'- gGCCUGgCAGGC---GCUCGcgACUGCCa- -3'
miRNA:   3'- -CGGAC-GUCCGgcuUGAGU--UGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 23230 0.68 0.370783
Target:  5'- cGCUUGgagAGGCCGAGgUgUAGCCGCUUGc -3'
miRNA:   3'- -CGGACg--UCCGGCUUgA-GUUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 22760 0.67 0.416867
Target:  5'- cGCCUGaauGGCagCGAcgagcuGCUCGAUCGCCa- -3'
miRNA:   3'- -CGGACgu-CCG--GCU------UGAGUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 22222 0.69 0.304589
Target:  5'- uUCUGCcccGGCCGAGCgauguUCAGCCGCgCUu -3'
miRNA:   3'- cGGACGu--CCGGCUUG-----AGUUGGCG-GAc -5'
30553 5' -57.7 NC_006548.1 + 22200 0.73 0.156657
Target:  5'- cGCCUGgGGGCCGcacGCgucuuucaucuaccgCGAUCGCCUGg -3'
miRNA:   3'- -CGGACgUCCGGCu--UGa--------------GUUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 21361 0.68 0.336501
Target:  5'- gGCgaGCGGuuGCCGcGACUCuGCCGCCg- -3'
miRNA:   3'- -CGgaCGUC--CGGC-UUGAGuUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 20779 0.66 0.47653
Target:  5'- gGCCUGgucaAGGCCG------GCCGCCUGc -3'
miRNA:   3'- -CGGACg---UCCGGCuugaguUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 18986 0.68 0.344851
Target:  5'- cGCCaUGUAGGCCcccgagccgGAACUggcgauuuccCGGCCGCCa- -3'
miRNA:   3'- -CGG-ACGUCCGG---------CUUGA----------GUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 18735 0.73 0.156221
Target:  5'- aGCC-GCAGGCCGugcuGCUCGAC-GCCa- -3'
miRNA:   3'- -CGGaCGUCCGGCu---UGAGUUGgCGGac -5'
30553 5' -57.7 NC_006548.1 + 18034 0.66 0.486886
Target:  5'- -gCUGCAGGCggucaaGGGCgagCGACCGuUCUGg -3'
miRNA:   3'- cgGACGUCCGg-----CUUGa--GUUGGC-GGAC- -5'
30553 5' -57.7 NC_006548.1 + 17126 0.7 0.282215
Target:  5'- aUUUGCAGGCCGAugUUcGCCuugaCCUGg -3'
miRNA:   3'- cGGACGUCCGGCUugAGuUGGc---GGAC- -5'
30553 5' -57.7 NC_006548.1 + 16409 0.66 0.47653
Target:  5'- gGCCagcgGCAauuGGCCGuAgUCAGCCGCgaGu -3'
miRNA:   3'- -CGGa---CGU---CCGGCuUgAGUUGGCGgaC- -5'
30553 5' -57.7 NC_006548.1 + 15671 0.68 0.352492
Target:  5'- cGCCUGCGaacagucGGCCGccCUCGggcuGCUGCCa- -3'
miRNA:   3'- -CGGACGU-------CCGGCuuGAGU----UGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 15401 0.67 0.388796
Target:  5'- cGUgUGCAGGCUGAuAUUCuucggauuGCCGCCc- -3'
miRNA:   3'- -CGgACGUCCGGCU-UGAGu-------UGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 15242 0.67 0.42456
Target:  5'- --gUGCAGGgCGAACUCGuccaggaugcguCCGCCg- -3'
miRNA:   3'- cggACGUCCgGCUUGAGUu-----------GGCGGac -5'
30553 5' -57.7 NC_006548.1 + 14464 0.66 0.436256
Target:  5'- cGCCucggUGCuGGCaCGAAUUgccgcCAGCCGCCg- -3'
miRNA:   3'- -CGG----ACGuCCG-GCUUGA-----GUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 14353 0.69 0.289525
Target:  5'- cGCCUGCAGGuCCGcgaUCAGCuCGUCc- -3'
miRNA:   3'- -CGGACGUCC-GGCuugAGUUG-GCGGac -5'
30553 5' -57.7 NC_006548.1 + 13566 0.7 0.282215
Target:  5'- uGCCUGCGcGGgCGGcggcaagcugcuGCUCAACCagauccagaaaaGCCUGg -3'
miRNA:   3'- -CGGACGU-CCgGCU------------UGAGUUGG------------CGGAC- -5'
30553 5' -57.7 NC_006548.1 + 9245 0.68 0.336501
Target:  5'- cGCCUGUcgauugaucacGGGCUGGAuCUgGACgGCCUa -3'
miRNA:   3'- -CGGACG-----------UCCGGCUU-GAgUUGgCGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.