miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30553 5' -57.7 NC_006548.1 + 15671 0.68 0.352492
Target:  5'- cGCCUGCGaacagucGGCCGccCUCGggcuGCUGCCa- -3'
miRNA:   3'- -CGGACGU-------CCGGCuuGAGU----UGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 27285 0.68 0.353348
Target:  5'- cGCCUcgGCAGcGCguuGCUCGgucGCCGCCUGc -3'
miRNA:   3'- -CGGA--CGUC-CGgcuUGAGU---UGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 4882 0.68 0.353348
Target:  5'- uGCCUcCGGGCuCGAuUUCGGCCGCUc- -3'
miRNA:   3'- -CGGAcGUCCG-GCUuGAGUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 1035 0.68 0.361992
Target:  5'- gGCCUGCAGGaCGAugUCuAUCGgCa- -3'
miRNA:   3'- -CGGACGUCCgGCUugAGuUGGCgGac -5'
30553 5' -57.7 NC_006548.1 + 29105 0.68 0.361992
Target:  5'- cGCCcaGCAGGCCGGuCUCGucagcgaacugGCCGCg-- -3'
miRNA:   3'- -CGGa-CGUCCGGCUuGAGU-----------UGGCGgac -5'
30553 5' -57.7 NC_006548.1 + 25419 0.68 0.370783
Target:  5'- gGCCgugcgcGCAGGCCcuucucGAuccauuccaGCUCGacaucuGCCGCCUGg -3'
miRNA:   3'- -CGGa-----CGUCCGG------CU---------UGAGU------UGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 23230 0.68 0.370783
Target:  5'- cGCUUGgagAGGCCGAGgUgUAGCCGCUUGc -3'
miRNA:   3'- -CGGACg--UCCGGCUUgA-GUUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 29452 0.67 0.388796
Target:  5'- cGCCUGCAGGaaCGAuACcgCGGCCuCCUGc -3'
miRNA:   3'- -CGGACGUCCg-GCU-UGa-GUUGGcGGAC- -5'
30553 5' -57.7 NC_006548.1 + 15401 0.67 0.388796
Target:  5'- cGUgUGCAGGCUGAuAUUCuucggauuGCCGCCc- -3'
miRNA:   3'- -CGgACGUCCGGCU-UGAGu-------UGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 22760 0.67 0.416867
Target:  5'- cGCCUGaauGGCagCGAcgagcuGCUCGAUCGCCa- -3'
miRNA:   3'- -CGGACgu-CCG--GCU------UGAGUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 15242 0.67 0.42456
Target:  5'- --gUGCAGGgCGAACUCGuccaggaugcguCCGCCg- -3'
miRNA:   3'- cggACGUCCgGCUUGAGUu-----------GGCGGac -5'
30553 5' -57.7 NC_006548.1 + 29562 0.67 0.425527
Target:  5'- aCC-GCAGGCgGAACUCugguggcuggugcGGCUGCCa- -3'
miRNA:   3'- cGGaCGUCCGgCUUGAG-------------UUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 476 0.67 0.426496
Target:  5'- aGCgaGCuGGCCGAACU-GAUCGUCg- -3'
miRNA:   3'- -CGgaCGuCCGGCUUGAgUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 36916 0.66 0.436256
Target:  5'- -gCUGCAGGCCGucAACUgguUGACuCGUCUGc -3'
miRNA:   3'- cgGACGUCCGGC--UUGA---GUUG-GCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 14464 0.66 0.436256
Target:  5'- cGCCucggUGCuGGCaCGAAUUgccgcCAGCCGCCg- -3'
miRNA:   3'- -CGG----ACGuCCG-GCUUGA-----GUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 28754 0.66 0.436256
Target:  5'- aUCUGaCAGGagcccuggaagcCCGuGCUCGcGCCGCCUGg -3'
miRNA:   3'- cGGAC-GUCC------------GGCuUGAGU-UGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 32796 0.66 0.446143
Target:  5'- aGCCUGCaAGGCUGAGgUCGaggaGCaCGCgCUc -3'
miRNA:   3'- -CGGACG-UCCGGCUUgAGU----UG-GCG-GAc -5'
30553 5' -57.7 NC_006548.1 + 7569 0.66 0.446143
Target:  5'- gGCCgaGCAGGCCGAggagcaagguGC-CGACCaucgcGCCUu -3'
miRNA:   3'- -CGGa-CGUCCGGCU----------UGaGUUGG-----CGGAc -5'
30553 5' -57.7 NC_006548.1 + 25845 0.66 0.456154
Target:  5'- aCgUGCGauguGGCgGAugUC-ACCGCCUGc -3'
miRNA:   3'- cGgACGU----CCGgCUugAGuUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 29155 0.66 0.456154
Target:  5'- gGCCUGCugggcGGCCuGGauACUCGACU-CCUGc -3'
miRNA:   3'- -CGGACGu----CCGG-CU--UGAGUUGGcGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.