miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30553 5' -57.7 NC_006548.1 + 22760 0.67 0.416867
Target:  5'- cGCCUGaauGGCagCGAcgagcuGCUCGAUCGCCa- -3'
miRNA:   3'- -CGGACgu-CCG--GCU------UGAGUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 29452 0.67 0.388796
Target:  5'- cGCCUGCAGGaaCGAuACcgCGGCCuCCUGc -3'
miRNA:   3'- -CGGACGUCCg-GCU-UGa-GUUGGcGGAC- -5'
30553 5' -57.7 NC_006548.1 + 15401 0.67 0.388796
Target:  5'- cGUgUGCAGGCUGAuAUUCuucggauuGCCGCCc- -3'
miRNA:   3'- -CGgACGUCCGGCU-UGAGu-------UGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 25419 0.68 0.370783
Target:  5'- gGCCgugcgcGCAGGCCcuucucGAuccauuccaGCUCGacaucuGCCGCCUGg -3'
miRNA:   3'- -CGGa-----CGUCCGG------CU---------UGAGU------UGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 23230 0.68 0.370783
Target:  5'- cGCUUGgagAGGCCGAGgUgUAGCCGCUUGc -3'
miRNA:   3'- -CGGACg--UCCGGCUUgA-GUUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 1035 0.68 0.361992
Target:  5'- gGCCUGCAGGaCGAugUCuAUCGgCa- -3'
miRNA:   3'- -CGGACGUCCgGCUugAGuUGGCgGac -5'
30553 5' -57.7 NC_006548.1 + 29105 0.68 0.361992
Target:  5'- cGCCcaGCAGGCCGGuCUCGucagcgaacugGCCGCg-- -3'
miRNA:   3'- -CGGa-CGUCCGGCUuGAGU-----------UGGCGgac -5'
30553 5' -57.7 NC_006548.1 + 4882 0.68 0.353348
Target:  5'- uGCCUcCGGGCuCGAuUUCGGCCGCUc- -3'
miRNA:   3'- -CGGAcGUCCG-GCUuGAGUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 27285 0.68 0.353348
Target:  5'- cGCCUcgGCAGcGCguuGCUCGgucGCCGCCUGc -3'
miRNA:   3'- -CGGA--CGUC-CGgcuUGAGU---UGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 15671 0.68 0.352492
Target:  5'- cGCCUGCGaacagucGGCCGccCUCGggcuGCUGCCa- -3'
miRNA:   3'- -CGGACGU-------CCGGCuuGAGU----UGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 18986 0.68 0.344851
Target:  5'- cGCCaUGUAGGCCcccgagccgGAACUggcgauuuccCGGCCGCCa- -3'
miRNA:   3'- -CGG-ACGUCCGG---------CUUGA----------GUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 21361 0.68 0.336501
Target:  5'- gGCgaGCGGuuGCCGcGACUCuGCCGCCg- -3'
miRNA:   3'- -CGgaCGUC--CGGC-UUGAGuUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 5724 0.68 0.336501
Target:  5'- aGCCUGgAccaCGGACUCGAUgGCCUGg -3'
miRNA:   3'- -CGGACgUccgGCUUGAGUUGgCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 9245 0.68 0.336501
Target:  5'- cGCCUGUcgauugaucacGGGCUGGAuCUgGACgGCCUa -3'
miRNA:   3'- -CGGACG-----------UCCGGCUU-GAgUUGgCGGAc -5'
30553 5' -57.7 NC_006548.1 + 22222 0.69 0.304589
Target:  5'- uUCUGCcccGGCCGAGCgauguUCAGCCGCgCUu -3'
miRNA:   3'- cGGACGu--CCGGCUUG-----AGUUGGCG-GAc -5'
30553 5' -57.7 NC_006548.1 + 25126 0.69 0.296231
Target:  5'- gGCCgggGCGGGCUGGgucuugcGCUCAACCuugcGCCc- -3'
miRNA:   3'- -CGGa--CGUCCGGCU-------UGAGUUGG----CGGac -5'
30553 5' -57.7 NC_006548.1 + 14353 0.69 0.289525
Target:  5'- cGCCUGCAGGuCCGcgaUCAGCuCGUCc- -3'
miRNA:   3'- -CGGACGUCC-GGCuugAGUUG-GCGGac -5'
30553 5' -57.7 NC_006548.1 + 17126 0.7 0.282215
Target:  5'- aUUUGCAGGCCGAugUUcGCCuugaCCUGg -3'
miRNA:   3'- cGGACGUCCGGCUugAGuUGGc---GGAC- -5'
30553 5' -57.7 NC_006548.1 + 13566 0.7 0.282215
Target:  5'- uGCCUGCGcGGgCGGcggcaagcugcuGCUCAACCagauccagaaaaGCCUGg -3'
miRNA:   3'- -CGGACGU-CCgGCU------------UGAGUUGG------------CGGAC- -5'
30553 5' -57.7 NC_006548.1 + 24446 0.7 0.282215
Target:  5'- cGCCUGCAauauGGCCGcuugcagcgcGGCaaGACCGCCa- -3'
miRNA:   3'- -CGGACGU----CCGGC----------UUGagUUGGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.