miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30553 5' -57.7 NC_006548.1 + 28087 1.09 0.000334
Target:  5'- gGCCUGCAGGCCGAACUCAACCGCCUGc -3'
miRNA:   3'- -CGGACGUCCGGCUUGAGUUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 28136 0.87 0.01573
Target:  5'- gGCCUGCAGGCCGc---CAGCCGCCUGc -3'
miRNA:   3'- -CGGACGUCCGGCuugaGUUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 28090 0.74 0.139648
Target:  5'- uCCUGCAGggccgcGCCGAaccgcggcagaaACUCGGCCGCCg- -3'
miRNA:   3'- cGGACGUC------CGGCU------------UGAGUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 36416 0.74 0.143633
Target:  5'- aUCUGCAGGCCGGACg--GCCGCa-- -3'
miRNA:   3'- cGGACGUCCGGCUUGaguUGGCGgac -5'
30553 5' -57.7 NC_006548.1 + 18735 0.73 0.156221
Target:  5'- aGCC-GCAGGCCGugcuGCUCGAC-GCCa- -3'
miRNA:   3'- -CGGaCGUCCGGCu---UGAGUUGgCGGac -5'
30553 5' -57.7 NC_006548.1 + 22200 0.73 0.156657
Target:  5'- cGCCUGgGGGCCGcacGCgucuuucaucuaccgCGAUCGCCUGg -3'
miRNA:   3'- -CGGACgUCCGGCu--UGa--------------GUUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 24017 0.73 0.164702
Target:  5'- cGCCUGcCAGGCCGGGCggugucCAGCCgaucaggGCCUu -3'
miRNA:   3'- -CGGAC-GUCCGGCUUGa-----GUUGG-------CGGAc -5'
30553 5' -57.7 NC_006548.1 + 965 0.72 0.181411
Target:  5'- aCCUGCgccAGGCUGAGCaguugcugacugaguUCAAgCGCCUGg -3'
miRNA:   3'- cGGACG---UCCGGCUUG---------------AGUUgGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 36368 0.72 0.189538
Target:  5'- gGCCUGCAGaugaacuacgcGCU--GCUCAGCCGCgUGg -3'
miRNA:   3'- -CGGACGUC-----------CGGcuUGAGUUGGCGgAC- -5'
30553 5' -57.7 NC_006548.1 + 32899 0.71 0.217025
Target:  5'- cGCCaGCGGGUauCGcACUCGACCGUUUGu -3'
miRNA:   3'- -CGGaCGUCCG--GCuUGAGUUGGCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 24446 0.7 0.282215
Target:  5'- cGCCUGCAauauGGCCGcuugcagcgcGGCaaGACCGCCa- -3'
miRNA:   3'- -CGGACGU----CCGGC----------UUGagUUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 13566 0.7 0.282215
Target:  5'- uGCCUGCGcGGgCGGcggcaagcugcuGCUCAACCagauccagaaaaGCCUGg -3'
miRNA:   3'- -CGGACGU-CCgGCU------------UGAGUUGG------------CGGAC- -5'
30553 5' -57.7 NC_006548.1 + 17126 0.7 0.282215
Target:  5'- aUUUGCAGGCCGAugUUcGCCuugaCCUGg -3'
miRNA:   3'- cGGACGUCCGGCUugAGuUGGc---GGAC- -5'
30553 5' -57.7 NC_006548.1 + 14353 0.69 0.289525
Target:  5'- cGCCUGCAGGuCCGcgaUCAGCuCGUCc- -3'
miRNA:   3'- -CGGACGUCC-GGCuugAGUUG-GCGGac -5'
30553 5' -57.7 NC_006548.1 + 25126 0.69 0.296231
Target:  5'- gGCCgggGCGGGCUGGgucuugcGCUCAACCuugcGCCc- -3'
miRNA:   3'- -CGGa--CGUCCGGCU-------UGAGUUGG----CGGac -5'
30553 5' -57.7 NC_006548.1 + 22222 0.69 0.304589
Target:  5'- uUCUGCcccGGCCGAGCgauguUCAGCCGCgCUu -3'
miRNA:   3'- cGGACGu--CCGGCUUG-----AGUUGGCG-GAc -5'
30553 5' -57.7 NC_006548.1 + 5724 0.68 0.336501
Target:  5'- aGCCUGgAccaCGGACUCGAUgGCCUGg -3'
miRNA:   3'- -CGGACgUccgGCUUGAGUUGgCGGAC- -5'
30553 5' -57.7 NC_006548.1 + 9245 0.68 0.336501
Target:  5'- cGCCUGUcgauugaucacGGGCUGGAuCUgGACgGCCUa -3'
miRNA:   3'- -CGGACG-----------UCCGGCUU-GAgUUGgCGGAc -5'
30553 5' -57.7 NC_006548.1 + 21361 0.68 0.336501
Target:  5'- gGCgaGCGGuuGCCGcGACUCuGCCGCCg- -3'
miRNA:   3'- -CGgaCGUC--CGGC-UUGAGuUGGCGGac -5'
30553 5' -57.7 NC_006548.1 + 18986 0.68 0.344851
Target:  5'- cGCCaUGUAGGCCcccgagccgGAACUggcgauuuccCGGCCGCCa- -3'
miRNA:   3'- -CGG-ACGUCCGG---------CUUGA----------GUUGGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.