miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30584 5' -51.3 NC_006549.1 + 125231 0.66 0.988146
Target:  5'- uGCGgAGAcUGCCCcguUACGAuccAUGCACa -3'
miRNA:   3'- uCGCgUUUuGCGGG---AUGCUu--UGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 64224 0.66 0.988146
Target:  5'- -aUGCcgGAGACGCCCgaaaugUACGcAGCGUACg -3'
miRNA:   3'- ucGCG--UUUUGCGGG------AUGCuUUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 130616 0.66 0.986537
Target:  5'- uGGUGuCGGAACGUCUggaAgGAGugGCGCu -3'
miRNA:   3'- -UCGC-GUUUUGCGGGa--UgCUUugCGUG- -5'
30584 5' -51.3 NC_006549.1 + 120096 0.66 0.986367
Target:  5'- cGGCGgucuaaaCGGAuucGCGCCCgaauuUGCGuuACGCGCg -3'
miRNA:   3'- -UCGC-------GUUU---UGCGGG-----AUGCuuUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 86173 0.66 0.98495
Target:  5'- gAGCGUAcGACGCCUcacaccaaucgcccgACGAGGgGCAg -3'
miRNA:   3'- -UCGCGUuUUGCGGGa--------------UGCUUUgCGUg -5'
30584 5' -51.3 NC_006549.1 + 20119 0.66 0.984765
Target:  5'- -aCGgAAAcCGCCCU-CGAaGACGCGCu -3'
miRNA:   3'- ucGCgUUUuGCGGGAuGCU-UUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 73256 0.66 0.984765
Target:  5'- gGGCGCAucagacACGCCUUuuCG-GACGCAa -3'
miRNA:   3'- -UCGCGUuu----UGCGGGAu-GCuUUGCGUg -5'
30584 5' -51.3 NC_006549.1 + 96461 0.66 0.984765
Target:  5'- cGCGCAAuccauaGGCGCCaaAC-AGACGCAg -3'
miRNA:   3'- uCGCGUU------UUGCGGgaUGcUUUGCGUg -5'
30584 5' -51.3 NC_006549.1 + 90187 0.66 0.982822
Target:  5'- -aCGaAAAGCGCCCUAagaGGAugGCGa -3'
miRNA:   3'- ucGCgUUUUGCGGGAUg--CUUugCGUg -5'
30584 5' -51.3 NC_006549.1 + 60475 0.66 0.982822
Target:  5'- cGCcCGAGGCGCCC-GCGAcGGCGUugGCg -3'
miRNA:   3'- uCGcGUUUUGCGGGaUGCU-UUGCG--UG- -5'
30584 5' -51.3 NC_006549.1 + 126934 0.66 0.982822
Target:  5'- uGGCGUGAAauacACGCCCgaaGAcgUGUACg -3'
miRNA:   3'- -UCGCGUUU----UGCGGGaugCUuuGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 57017 0.66 0.982822
Target:  5'- cGCGCcuGACGCCacaaGAGAC-CACa -3'
miRNA:   3'- uCGCGuuUUGCGGgaugCUUUGcGUG- -5'
30584 5' -51.3 NC_006549.1 + 36715 0.66 0.982822
Target:  5'- gAGaCGCAgaaccccgcAGACGUCCUcucacgucaaACGAAAUGUGCg -3'
miRNA:   3'- -UC-GCGU---------UUUGCGGGA----------UGCUUUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 73349 0.66 0.980697
Target:  5'- cGCGCcuuGCGCUCUgagucauccacACGuuACGUACg -3'
miRNA:   3'- uCGCGuuuUGCGGGA-----------UGCuuUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 72049 0.67 0.978382
Target:  5'- -cUGCGAAACcCCCgcCGAAcccACGCACg -3'
miRNA:   3'- ucGCGUUUUGcGGGauGCUU---UGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 10448 0.67 0.975868
Target:  5'- cGCGCGgaAGACGCUCUGagaAAACGC-Ca -3'
miRNA:   3'- uCGCGU--UUUGCGGGAUgc-UUUGCGuG- -5'
30584 5' -51.3 NC_006549.1 + 47949 0.67 0.973146
Target:  5'- cAGCGCAAAACGUgCUGgaAGACGgAUc -3'
miRNA:   3'- -UCGCGUUUUGCGgGAUgcUUUGCgUG- -5'
30584 5' -51.3 NC_006549.1 + 30080 0.67 0.973146
Target:  5'- uAG-GCAAAGCGCgCaa-GAAGCGUACg -3'
miRNA:   3'- -UCgCGUUUUGCGgGaugCUUUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 30950 0.67 0.970209
Target:  5'- uAGCGCAcaauauaacgcAAACGUCCguggaagGCGgcAUGUACa -3'
miRNA:   3'- -UCGCGU-----------UUUGCGGGa------UGCuuUGCGUG- -5'
30584 5' -51.3 NC_006549.1 + 23854 0.67 0.970209
Target:  5'- cGGCGUAu--UGCCagaaUACGAAaacgacACGCGCg -3'
miRNA:   3'- -UCGCGUuuuGCGGg---AUGCUU------UGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.