miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30597 3' -48 NC_006549.1 + 83213 0.66 0.999607
Target:  5'- --aCugGCGUAcGGuACCGUGGCGcucACCc -3'
miRNA:   3'- auaGugUGCGUuUC-UGGCAUUGC---UGG- -5'
30597 3' -48 NC_006549.1 + 35875 0.66 0.999384
Target:  5'- ---gGCGUGCGGAGAacCCGgaaaAGCGACCa -3'
miRNA:   3'- auagUGUGCGUUUCU--GGCa---UUGCUGG- -5'
30597 3' -48 NC_006549.1 + 69082 0.66 0.999384
Target:  5'- gUAUCGCACGUucgcGGCC--AACGACa -3'
miRNA:   3'- -AUAGUGUGCGuuu-CUGGcaUUGCUGg -5'
30597 3' -48 NC_006549.1 + 80558 0.66 0.999371
Target:  5'- --aCACACgGCAAAGACgGUcauggguucguccGcCGACCu -3'
miRNA:   3'- auaGUGUG-CGUUUCUGgCA-------------UuGCUGG- -5'
30597 3' -48 NC_006549.1 + 80130 0.66 0.999236
Target:  5'- aAUUACgagGCGCuGGAGAUCGUgGGCGACg -3'
miRNA:   3'- aUAGUG---UGCG-UUUCUGGCA-UUGCUGg -5'
30597 3' -48 NC_006549.1 + 74544 0.66 0.999236
Target:  5'- --aCugACGgaaaUAGGGGCCGUGugGGCg -3'
miRNA:   3'- auaGugUGC----GUUUCUGGCAUugCUGg -5'
30597 3' -48 NC_006549.1 + 126925 0.66 0.999236
Target:  5'- --aUACACGCccGAAGACgUGUacGACGAUCu -3'
miRNA:   3'- auaGUGUGCG--UUUCUG-GCA--UUGCUGG- -5'
30597 3' -48 NC_006549.1 + 125757 0.66 0.999236
Target:  5'- -cUCGCAaucUGCGgccaGGGAuCCGaGACGACCg -3'
miRNA:   3'- auAGUGU---GCGU----UUCU-GGCaUUGCUGG- -5'
30597 3' -48 NC_006549.1 + 71587 0.66 0.999236
Target:  5'- uUGUCGC-UGUAAucuuCCGUGGCGAUCu -3'
miRNA:   3'- -AUAGUGuGCGUUucu-GGCAUUGCUGG- -5'
30597 3' -48 NC_006549.1 + 41756 0.66 0.99922
Target:  5'- -cUgGCGCGCAAGGuCCGUcuggcaaGACugGACCc -3'
miRNA:   3'- auAgUGUGCGUUUCuGGCA-------UUG--CUGG- -5'
30597 3' -48 NC_006549.1 + 69557 0.67 0.998848
Target:  5'- cUAUCGaa-GaCGAGGACgGUAACGGCUc -3'
miRNA:   3'- -AUAGUgugC-GUUUCUGgCAUUGCUGG- -5'
30597 3' -48 NC_006549.1 + 97317 0.67 0.998302
Target:  5'- -uUCGCGCaaGCAGAGA-CGgcGCuGACCg -3'
miRNA:   3'- auAGUGUG--CGUUUCUgGCauUG-CUGG- -5'
30597 3' -48 NC_006549.1 + 97226 0.67 0.997553
Target:  5'- -cUCugGCGCcGAcaacagacuGGCCGUGAUGGCg -3'
miRNA:   3'- auAGugUGCGuUU---------CUGGCAUUGCUGg -5'
30597 3' -48 NC_006549.1 + 65916 0.68 0.997035
Target:  5'- -cUCGCACGCGucgcccAAGGCCuuugcuucuuguuGUuuuACGGCCa -3'
miRNA:   3'- auAGUGUGCGU------UUCUGG-------------CAu--UGCUGG- -5'
30597 3' -48 NC_006549.1 + 44255 0.68 0.996488
Target:  5'- cGUCACGaGCAAaauuGGAcuguugauauguuCCGUGGCGAUCg -3'
miRNA:   3'- aUAGUGUgCGUU----UCU-------------GGCAUUGCUGG- -5'
30597 3' -48 NC_006549.1 + 31439 0.68 0.995928
Target:  5'- gAUCGCgaGCGCAucauGGccaauuuuGCCGUAGCGAUa -3'
miRNA:   3'- aUAGUG--UGCGUu---UC--------UGGCAUUGCUGg -5'
30597 3' -48 NC_006549.1 + 105113 0.68 0.995928
Target:  5'- uUGUCACACGCGGGGAUuaccuccaCG-AACGAa- -3'
miRNA:   3'- -AUAGUGUGCGUUUCUG--------GCaUUGCUgg -5'
30597 3' -48 NC_006549.1 + 83508 0.68 0.995221
Target:  5'- -uUCGCGC-CGGaaccGGACC-UGACGGCCg -3'
miRNA:   3'- auAGUGUGcGUU----UCUGGcAUUGCUGG- -5'
30597 3' -48 NC_006549.1 + 53465 0.68 0.994418
Target:  5'- --aUACGCGCgAGAGACgaGcgGGCGGCCg -3'
miRNA:   3'- auaGUGUGCG-UUUCUGg-Ca-UUGCUGG- -5'
30597 3' -48 NC_006549.1 + 64024 0.68 0.994418
Target:  5'- -uUUAguCGUGAGGGCCGUGGCGuACg -3'
miRNA:   3'- auAGUguGCGUUUCUGGCAUUGC-UGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.