miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30600 5' -52.2 NC_006549.1 + 74176 0.66 0.984611
Target:  5'- gUGGGCGGA----AUCCAAACaCGCCa -3'
miRNA:   3'- uGCCCGCUUcuuaUGGGUUUG-GUGGg -5'
30600 5' -52.2 NC_006549.1 + 90207 0.66 0.984611
Target:  5'- gGCGGGCuuauGGAGA--ACCaacgaAAAgCGCCCu -3'
miRNA:   3'- -UGCCCG----CUUCUuaUGGg----UUUgGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 69846 0.66 0.978318
Target:  5'- aGCGGGCG--GAAUGCCaggguacgaaaAGACCGCg- -3'
miRNA:   3'- -UGCCCGCuuCUUAUGGg----------UUUGGUGgg -5'
30600 5' -52.2 NC_006549.1 + 11122 0.66 0.978318
Target:  5'- cCGuGGCGGA----ACCCAAAcCCACCa -3'
miRNA:   3'- uGC-CCGCUUcuuaUGGGUUU-GGUGGg -5'
30600 5' -52.2 NC_006549.1 + 70911 0.66 0.978318
Target:  5'- -gGGGCGA---GUGCCCucuCgACCCc -3'
miRNA:   3'- ugCCCGCUucuUAUGGGuuuGgUGGG- -5'
30600 5' -52.2 NC_006549.1 + 98998 0.66 0.978318
Target:  5'- gUGGcGCGuuGAGcgcggcACCCAAGgCGCCCg -3'
miRNA:   3'- uGCC-CGCuuCUUa-----UGGGUUUgGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 6628 0.67 0.96909
Target:  5'- cCGGGcCGAcuGGAAUACcgggucccacugggCCGcagggagacgcagGACCACCCg -3'
miRNA:   3'- uGCCC-GCU--UCUUAUG--------------GGU-------------UUGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 137645 0.67 0.967209
Target:  5'- -aGGaGaCGAAGggUAUCCGGccacggcgaaacACUACCCu -3'
miRNA:   3'- ugCC-C-GCUUCuuAUGGGUU------------UGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 77127 0.67 0.967209
Target:  5'- aACGGcucCGGAGA--ACCCAAAagACCCg -3'
miRNA:   3'- -UGCCc--GCUUCUuaUGGGUUUggUGGG- -5'
30600 5' -52.2 NC_006549.1 + 59830 0.67 0.967209
Target:  5'- aAC-GGCGucccAGUGCCCGGccacGCCGCCCc -3'
miRNA:   3'- -UGcCCGCuuc-UUAUGGGUU----UGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 8836 0.67 0.967209
Target:  5'- gACGcGGCGcaaacGGAAgacGCCgaaaaCGGACCGCCCa -3'
miRNA:   3'- -UGC-CCGCu----UCUUa--UGG-----GUUUGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 7821 0.67 0.967209
Target:  5'- cGCGGGCGuucAGggU-CCCGAGggACCa -3'
miRNA:   3'- -UGCCCGCu--UCuuAuGGGUUUggUGGg -5'
30600 5' -52.2 NC_006549.1 + 87916 0.67 0.963896
Target:  5'- aAUGGGUGAucgagcGAAUGCUCAGGCaCAaaaCCa -3'
miRNA:   3'- -UGCCCGCUu-----CUUAUGGGUUUG-GUg--GG- -5'
30600 5' -52.2 NC_006549.1 + 36321 0.67 0.963896
Target:  5'- cGCGaaaaauGCGAAGAGUuucucgaaaACCCGGGCaucaACCCa -3'
miRNA:   3'- -UGCc-----CGCUUCUUA---------UGGGUUUGg---UGGG- -5'
30600 5' -52.2 NC_006549.1 + 97093 0.67 0.963896
Target:  5'- aACGGaCGGAGGAcaaUGCCUc-ACUACCCu -3'
miRNA:   3'- -UGCCcGCUUCUU---AUGGGuuUGGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 96920 0.67 0.960356
Target:  5'- gACGGGCGucacGGGAUACgCCGAACgCAa-- -3'
miRNA:   3'- -UGCCCGCu---UCUUAUG-GGUUUG-GUggg -5'
30600 5' -52.2 NC_006549.1 + 82026 0.67 0.960356
Target:  5'- aGCGGGgGAuGggUAuaacCCCAugucccuccguuAugCGCCCa -3'
miRNA:   3'- -UGCCCgCUuCuuAU----GGGU------------UugGUGGG- -5'
30600 5' -52.2 NC_006549.1 + 38939 0.68 0.956583
Target:  5'- uCGGGUGcGGAAcACCCAuugcuuguaacGAUgGCCCu -3'
miRNA:   3'- uGCCCGCuUCUUaUGGGU-----------UUGgUGGG- -5'
30600 5' -52.2 NC_006549.1 + 98078 0.68 0.956193
Target:  5'- aGCGcGGUGAcGAGUucgaaugGCCCAAAUUagaGCCCg -3'
miRNA:   3'- -UGC-CCGCUuCUUA-------UGGGUUUGG---UGGG- -5'
30600 5' -52.2 NC_006549.1 + 119620 0.68 0.954206
Target:  5'- -gGGGCGGAGGggcgugcuguAUGCCUGGuauucucauucuauCCACCCc -3'
miRNA:   3'- ugCCCGCUUCU----------UAUGGGUUu-------------GGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.