miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30630 5' -63.9 NC_006549.1 + 6744 0.66 0.590023
Target:  5'- -aGGGCCCga-CGGAgaCaaGGGUCCa -3'
miRNA:   3'- agCCCGGGaacGCCUggGcgCCCAGG- -5'
30630 5' -63.9 NC_006549.1 + 40694 0.66 0.561368
Target:  5'- cCGGGaCCUcGCGGacaaauggGCCCGCaaGGUCUg -3'
miRNA:   3'- aGCCCgGGAaCGCC--------UGGGCGc-CCAGG- -5'
30630 5' -63.9 NC_006549.1 + 41254 0.66 0.561368
Target:  5'- gUUGGGCCCaaa-GGACCCaCGGG-Cg -3'
miRNA:   3'- -AGCCCGGGaacgCCUGGGcGCCCaGg -5'
30630 5' -63.9 NC_006549.1 + 7846 0.66 0.561368
Target:  5'- aCGGuCCCguagguucgaGgGGACCCGCGGGcgUUCa -3'
miRNA:   3'- aGCCcGGGaa--------CgCCUGGGCGCCC--AGG- -5'
30630 5' -63.9 NC_006549.1 + 41131 0.66 0.546237
Target:  5'- -gGGGCCCgagaggaccuauCGGcCCCGCGGGg-- -3'
miRNA:   3'- agCCCGGGaac---------GCCuGGGCGCCCagg -5'
30630 5' -63.9 NC_006549.1 + 7387 0.66 0.533106
Target:  5'- -aGGGCCCca--GGGCCCGCccggcccuccaGGGcCCc -3'
miRNA:   3'- agCCCGGGaacgCCUGGGCG-----------CCCaGG- -5'
30630 5' -63.9 NC_006549.1 + 41075 0.66 0.533106
Target:  5'- gCGGGCgaaaGUGGGCCCGCuGGcCCc -3'
miRNA:   3'- aGCCCGggaaCGCCUGGGCGcCCaGG- -5'
30630 5' -63.9 NC_006549.1 + 83621 0.67 0.523796
Target:  5'- cCGGGuUUCUUGCGGGCCgaaGGGUUg -3'
miRNA:   3'- aGCCC-GGGAACGCCUGGgcgCCCAGg -5'
30630 5' -63.9 NC_006549.1 + 50526 0.67 0.523796
Target:  5'- -gGGGCCCguuUGU---CCgGUGGGUCCa -3'
miRNA:   3'- agCCCGGGa--ACGccuGGgCGCCCAGG- -5'
30630 5' -63.9 NC_006549.1 + 102277 0.67 0.514549
Target:  5'- cCGGGCUCUccucUG-GGGCCUG-GGaGUCCu -3'
miRNA:   3'- aGCCCGGGA----ACgCCUGGGCgCC-CAGG- -5'
30630 5' -63.9 NC_006549.1 + 7962 0.67 0.514549
Target:  5'- -aGGGCCCggucuccGCGGAgcgcccggaCCCGaUGGGgagCCg -3'
miRNA:   3'- agCCCGGGaa-----CGCCU---------GGGC-GCCCa--GG- -5'
30630 5' -63.9 NC_006549.1 + 41765 0.67 0.514549
Target:  5'- aCGGGCCC--GCuGGCgCGCaaGGUCCg -3'
miRNA:   3'- aGCCCGGGaaCGcCUGgGCGc-CCAGG- -5'
30630 5' -63.9 NC_006549.1 + 50973 0.68 0.460608
Target:  5'- -gGGGCCCaUG-GGGCCCuuCGGG-CCu -3'
miRNA:   3'- agCCCGGGaACgCCUGGGc-GCCCaGG- -5'
30630 5' -63.9 NC_006549.1 + 7177 0.68 0.451907
Target:  5'- cCGGGCCCcga-GGACCuCcCGGGcCCa -3'
miRNA:   3'- aGCCCGGGaacgCCUGG-GcGCCCaGG- -5'
30630 5' -63.9 NC_006549.1 + 41406 0.68 0.426358
Target:  5'- gCGGGCCCcguuggGCcaaaaGGGCCCaGCGGGg-- -3'
miRNA:   3'- aGCCCGGGaa----CG-----CCUGGG-CGCCCagg -5'
30630 5' -63.9 NC_006549.1 + 50564 0.69 0.401687
Target:  5'- gUUGGGCCaaccugacCUUGaGGcCCCGCcGGUCCg -3'
miRNA:   3'- -AGCCCGG--------GAACgCCuGGGCGcCCAGG- -5'
30630 5' -63.9 NC_006549.1 + 50447 0.69 0.401687
Target:  5'- aCuGGCCCcgcCGGACCgGCGGGgCCc -3'
miRNA:   3'- aGcCCGGGaacGCCUGGgCGCCCaGG- -5'
30630 5' -63.9 NC_006549.1 + 102457 0.7 0.362646
Target:  5'- -gGGGCgCCa-GCuGGGCCgGgGGGUCCa -3'
miRNA:   3'- agCCCG-GGaaCG-CCUGGgCgCCCAGG- -5'
30630 5' -63.9 NC_006549.1 + 6665 0.7 0.355161
Target:  5'- aUGGGaCCCacG-GGACCCGCuggcgauccGGGUCCu -3'
miRNA:   3'- aGCCC-GGGaaCgCCUGGGCG---------CCCAGG- -5'
30630 5' -63.9 NC_006549.1 + 49805 0.7 0.355161
Target:  5'- gUGGGCCCa-GCuGGGCCCaCGGGaCCc -3'
miRNA:   3'- aGCCCGGGaaCG-CCUGGGcGCCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.